RNA–Protein interactions for RNA: ENST00000430249.6

CPS1-203, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 1 (best) BASIC

Gene CPS1, Length 5,698 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-203ENST00000430249 NISCHQ9Y2I1 1504 aa11.91□□□□□ -0.5
CPS1-203ENST00000430249 DCAF8L2P0C7V8 631 aa11.8□□□□□ -0.52
CPS1-203ENST00000430249 SUPT5HO00267 1087 aaKnown RBP11.24□□□□□ -0.61
CPS1-203ENST00000430249 PELP1Q8IZL8 1130 aaKnown RBP11.18□□□□□ -0.62
CPS1-203ENST00000430249 FAM9AQ8IZU1 332 aaPredicted RBP11.09□□□□□ -0.63
CPS1-203ENST00000430249 APLP2Q06481 763 aa11.04□□□□□ -0.64
CPS1-203ENST00000430249 SHROOM4Q9ULL8 1493 aa11.03□□□□□ -0.64
CPS1-203ENST00000430249 ZEB1P37275 1124 aaPredicted RBP10.85□□□□□ -0.67
CPS1-203ENST00000430249 CCER1Q8TC90 406 aaPredicted RBP10.66□□□□□ -0.7
CPS1-203ENST00000430249 CENPBP07199 599 aaPredicted RBP10.64□□□□□ -0.71
CPS1-203ENST00000430249 TRIM41Q8WV44 630 aa10.64□□□□□ -0.71
CPS1-203ENST00000430249 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
CPS1-203ENST00000430249 MYT1Q01538 1121 aa10.48□□□□□ -0.73
CPS1-203ENST00000430249 ERICH6Q7L0X2 663 aa10.47□□□□□ -0.73
CPS1-203ENST00000430249 PCGF6Q9BYE7 350 aa10.47□□□□□ -0.73
CPS1-203ENST00000430249 UBTFP17480 764 aaKnown RBP10.46□□□□□ -0.73
CPS1-203ENST00000430249 NEFLP07196 543 aa10.41□□□□□ -0.74
CPS1-203ENST00000430249 ATP1B4Q9UN42 357 aaPredicted RBP10.36□□□□□ -0.75
CPS1-203ENST00000430249 TRIM26Q12899 539 aaPredicted RBP10.35□□□□□ -0.75
CPS1-203ENST00000430249 TTBK1Q5TCY1 1321 aaPredicted RBP10.29□□□□□ -0.76
CPS1-203ENST00000430249 RANGAP1P46060 587 aaPredicted RBP10.27□□□□□ -0.77
CPS1-203ENST00000430249 HRCP23327 699 aa10.11□□□□□ -0.79
CPS1-203ENST00000430249 CHIC1Q5VXU3 224 aa10.11□□□□□ -0.79
CPS1-203ENST00000430249 DAXXQ9UER7 740 aaPredicted RBP10.1□□□□□ -0.79
CPS1-203ENST00000430249 YTHDC1Q96MU7 727 aaKnown RBP10.09□□□□□ -0.79
CPS1-203ENST00000430249 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.07□□□□□ -0.8
CPS1-203ENST00000430249 HNRNPUL2Q1KMD3 747 aaKnown RBP10.07□□□□□ -0.8
CPS1-203ENST00000430249 MYT1LQ9UL68 1186 aa10.05□□□□□ -0.8
CPS1-203ENST00000430249 CCDC180Q9P1Z9 1646 aa10.03□□□□□ -0.8
CPS1-203ENST00000430249 ABCC9O60706 1549 aa9.99□□□□□ -0.81
CPS1-203ENST00000430249 ITGAEP38570 1179 aa9.94□□□□□ -0.82
CPS1-203ENST00000430249 ZCCHC6Q5VYS8 1495 aaKnown RBP9.91□□□□□ -0.82
CPS1-203ENST00000430249 PPARGC1BQ86YN6 1023 aaKnown RBP9.88□□□□□ -0.83
CPS1-203ENST00000430249 POLR3GLQ9BT43 218 aa9.88□□□□□ -0.83
CPS1-203ENST00000430249 FAM50AQ14320 339 aaKnown RBP9.88□□□□□ -0.83
CPS1-203ENST00000430249 LOC105371045A0A1W2PR82 267 aa9.87□□□□□ -0.83
CPS1-203ENST00000430249 CLSPNQ9HAW4 1339 aa9.86□□□□□ -0.83
CPS1-203ENST00000430249 DIEXFQ68CQ4 756 aaKnown RBP9.86□□□□□ -0.83
CPS1-203ENST00000430249 ZNF316A6NFI3 1004 aaPredicted RBP9.85□□□□□ -0.83
CPS1-203ENST00000430249 TRIM52Q96A61 297 aa9.85□□□□□ -0.83
CPS1-203ENST00000430249 ACIN1Q9UKV3 1341 aaKnown RBP9.84□□□□□ -0.83
CPS1-203ENST00000430249 RTL5Q5HYW3 569 aaPredicted RBP9.83□□□□□ -0.84
CPS1-203ENST00000430249 CDK11AQ9UQ88 783 aaPredicted RBP9.82□□□□□ -0.84
CPS1-203ENST00000430249 ANP32CO43423 234 aa9.82□□□□□ -0.84
CPS1-203ENST00000430249 PABPN1Q86U42 306 aaKnown RBP eCLIP9.8□□□□□ -0.84
CPS1-203ENST00000430249 CSRNP3Q8WYN3 585 aa9.78□□□□□ -0.84
CPS1-203ENST00000430249 SLC4A1APQ9BWU0 796 aaKnown RBP9.78□□□□□ -0.84
CPS1-203ENST00000430249 DCAF1Q9Y4B6 1507 aa9.77□□□□□ -0.85
CPS1-203ENST00000430249 ZBTB47Q9UFB7 747 aaPredicted RBP9.76□□□□□ -0.85
CPS1-203ENST00000430249 SCRIBQ14160 1630 aa9.76□□□□□ -0.85
CPS1-203ENST00000430249 RB1CC1Q8TDY2 1594 aa9.76□□□□□ -0.85
CPS1-203ENST00000430249 NEFMP07197 916 aa9.74□□□□□ -0.85
CPS1-203ENST00000430249 EEA1Q15075 1411 aa9.72□□□□□ -0.85
CPS1-203ENST00000430249 NACADO15069 1562 aa9.7□□□□□ -0.86
CPS1-203ENST00000430249 NEUROD1Q13562 356 aa9.69□□□□□ -0.86
CPS1-203ENST00000430249 CANXP27824 592 aaKnown RBP9.63□□□□□ -0.87
CPS1-203ENST00000430249 FBLN2P98095 1184 aa9.62□□□□□ -0.87
CPS1-203ENST00000430249 TONSLQ96HA7 1378 aa9.62□□□□□ -0.87
CPS1-203ENST00000430249 RSF1Q96T23 1441 aaPredicted RBP9.59□□□□□ -0.87
CPS1-203ENST00000430249 ZNF326Q5BKZ1 582 aaKnown RBP9.58□□□□□ -0.88
CPS1-203ENST00000430249 NPM1P06748 294 aaKnown RBP eCLIP9.57□□□□□ -0.88
CPS1-203ENST00000430249 ANP32AP39687 249 aaKnown RBP9.57□□□□□ -0.88
CPS1-203ENST00000430249 ESF1Q9H501 851 aaKnown RBP9.57□□□□□ -0.88
CPS1-203ENST00000430249 GOLGA3Q08378 1498 aa9.56□□□□□ -0.88
CPS1-203ENST00000430249 CNGB1Q14028 1251 aaPredicted RBP9.55□□□□□ -0.88
CPS1-203ENST00000430249 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.53□□□□□ -0.88
CPS1-203ENST00000430249 GTF3C3Q9Y5Q9 886 aa9.51□□□□□ -0.89
CPS1-203ENST00000430249 BCANQ96GW7 911 aa9.51□□□□□ -0.89
CPS1-203ENST00000430249 ZNF777Q9ULD5 760 aaPredicted RBP9.51□□□□□ -0.89
CPS1-203ENST00000430249 UPF2Q9HAU5 1272 aaKnown RBP9.5□□□□□ -0.89
CPS1-203ENST00000430249 CLIP1P30622 1438 aa9.5□□□□□ -0.89
CPS1-203ENST00000430249 MTUS2Q5JR59 1369 aa9.49□□□□□ -0.89
CPS1-203ENST00000430249 EIF5BO60841 1220 aaKnown RBP9.49□□□□□ -0.89
CPS1-203ENST00000430249 P3H3Q8IVL6 736 aa9.48□□□□□ -0.89
CPS1-203ENST00000430249 ANP32BQ92688 251 aaKnown RBP9.48□□□□□ -0.89
CPS1-203ENST00000430249 BAZ1BQ9UIG0 1483 aaKnown RBP9.48□□□□□ -0.89
CPS1-203ENST00000430249 BAZ1AQ9NRL2 1556 aaPredicted RBP9.48□□□□□ -0.89
CPS1-203ENST00000430249 CEP164Q9UPV0 1460 aa9.48□□□□□ -0.89
CPS1-203ENST00000430249 TSPY4P0CV99 314 aa9.47□□□□□ -0.89
CPS1-203ENST00000430249 TSPY10P0CW01 314 aa9.47□□□□□ -0.89
CPS1-203ENST00000430249 STAG3Q9UJ98 1225 aa9.46□□□□□ -0.89
CPS1-203ENST00000430249 KIF27Q86VH2 1401 aa9.46□□□□□ -0.9
CPS1-203ENST00000430249 WRNQ14191 1432 aaPredicted RBP eCLIP9.44□□□□□ -0.9
CPS1-203ENST00000430249 TNIKQ9UKE5 1360 aa9.43□□□□□ -0.9
CPS1-203ENST00000430249 CDCA8Q53HL2 280 aa9.42□□□□□ -0.9
CPS1-203ENST00000430249 CHMP7Q8WUX9 453 aaPredicted RBP9.41□□□□□ -0.9
CPS1-203ENST00000430249 WDR43Q15061 677 aaKnown RBP eCLIP9.41□□□□□ -0.9
CPS1-203ENST00000430249 SLC24A1O60721 1099 aa9.41□□□□□ -0.9
CPS1-203ENST00000430249 CEP162Q5TB80 1403 aa9.39□□□□□ -0.91
CPS1-203ENST00000430249 FHAD1B1AJZ9 1412 aa9.39□□□□□ -0.91
CPS1-203ENST00000430249 TMC1Q8TDI8 760 aa9.38□□□□□ -0.91
CPS1-203ENST00000430249 EIF4G2P78344 907 aaKnown RBP eCLIP9.37□□□□□ -0.91
CPS1-203ENST00000430249 MYO15BQ96JP2 1530 aa9.37□□□□□ -0.91
CPS1-203ENST00000430249 PLEKHD1A6NEE1 506 aa9.36□□□□□ -0.91
CPS1-203ENST00000430249 ANP32EQ9BTT0 268 aa9.36□□□□□ -0.91
CPS1-203ENST00000430249 MYH16Q9H6N6 1097 aa9.36□□□□□ -0.91
CPS1-203ENST00000430249 HSP90AA1P07900 732 aaKnown RBP9.36□□□□□ -0.91
CPS1-203ENST00000430249 CHGAP10645 457 aaKnown RBP9.36□□□□□ -0.91
CPS1-203ENST00000430249 HNRNPUQ00839 825 aaKnown RBP eCLIP9.36□□□□□ -0.91
CPS1-203ENST00000430249 ARID3CA6NKF2 412 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms