RNA–Protein interactions for RNA: ENST00000428331.6

ATP2C1-204, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATP2C1, Length 4,795 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-204ENST00000428331 NISCHQ9Y2I1 1504 aa20.54■□□□□ 0.88
ATP2C1-204ENST00000428331 SHROOM4Q9ULL8 1493 aa18.18■□□□□ 0.5
ATP2C1-204ENST00000428331 SUPT5HO00267 1087 aaKnown RBP18.16■□□□□ 0.5
ATP2C1-204ENST00000428331 DCAF8L2P0C7V8 631 aa17.7■□□□□ 0.42
ATP2C1-204ENST00000428331 HRCP23327 699 aa17.69■□□□□ 0.42
ATP2C1-204ENST00000428331 PCGF6Q9BYE7 350 aa17.6■□□□□ 0.41
ATP2C1-204ENST00000428331 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
ATP2C1-204ENST00000428331 ZCCHC6Q5VYS8 1495 aaKnown RBP17.36■□□□□ 0.37
ATP2C1-204ENST00000428331 MYO15BQ96JP2 1530 aa17.24■□□□□ 0.35
ATP2C1-204ENST00000428331 PPARGC1BQ86YN6 1023 aaKnown RBP17.22■□□□□ 0.35
ATP2C1-204ENST00000428331 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
ATP2C1-204ENST00000428331 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
ATP2C1-204ENST00000428331 CCDC180Q9P1Z9 1646 aa17.11■□□□□ 0.33
ATP2C1-204ENST00000428331 ZEB1P37275 1124 aaPredicted RBP17.09■□□□□ 0.33
ATP2C1-204ENST00000428331 DCAF1Q9Y4B6 1507 aa17.08■□□□□ 0.32
ATP2C1-204ENST00000428331 PELP1Q8IZL8 1130 aaKnown RBP16.96■□□□□ 0.3
ATP2C1-204ENST00000428331 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
ATP2C1-204ENST00000428331 FAM9AQ8IZU1 332 aaPredicted RBP16.82■□□□□ 0.28
ATP2C1-204ENST00000428331 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
ATP2C1-204ENST00000428331 CCER1Q8TC90 406 aaPredicted RBP16.56■□□□□ 0.24
ATP2C1-204ENST00000428331 CENPBP07199 599 aaPredicted RBP16.5■□□□□ 0.23
ATP2C1-204ENST00000428331 RSF1Q96T23 1441 aaPredicted RBP16.45■□□□□ 0.22
ATP2C1-204ENST00000428331 SCAF1Q9H7N4 1312 aaKnown RBP16.44■□□□□ 0.22
ATP2C1-204ENST00000428331 ABCC9O60706 1549 aa16.4■□□□□ 0.22
ATP2C1-204ENST00000428331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.38■□□□□ 0.21
ATP2C1-204ENST00000428331 ACIN1Q9UKV3 1341 aaKnown RBP16.33■□□□□ 0.2
ATP2C1-204ENST00000428331 SCRIBQ14160 1630 aa16.33■□□□□ 0.2
ATP2C1-204ENST00000428331 MYT1Q01538 1121 aa16.32■□□□□ 0.2
ATP2C1-204ENST00000428331 DIEXFQ68CQ4 756 aaKnown RBP16.31■□□□□ 0.2
ATP2C1-204ENST00000428331 TTBK1Q5TCY1 1321 aaPredicted RBP16.29■□□□□ 0.2
ATP2C1-204ENST00000428331 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
ATP2C1-204ENST00000428331 GTF3C3Q9Y5Q9 886 aa16.21■□□□□ 0.19
ATP2C1-204ENST00000428331 NEUROD1Q13562 356 aa16.19■□□□□ 0.18
ATP2C1-204ENST00000428331 UBTFP17480 764 aaKnown RBP16.14■□□□□ 0.17
ATP2C1-204ENST00000428331 YTHDC1Q96MU7 727 aaKnown RBP16.07■□□□□ 0.16
ATP2C1-204ENST00000428331 APLP2Q06481 763 aa16.06■□□□□ 0.16
ATP2C1-204ENST00000428331 ZNF316A6NFI3 1004 aaPredicted RBP16.06■□□□□ 0.16
ATP2C1-204ENST00000428331 CECR2Q9BXF3 1484 aa16.02■□□□□ 0.16
ATP2C1-204ENST00000428331 MROH2BQ7Z745 1585 aa15.97■□□□□ 0.15
ATP2C1-204ENST00000428331 CSRNP3Q8WYN3 585 aa15.95■□□□□ 0.14
ATP2C1-204ENST00000428331 NACADO15069 1562 aa15.94■□□□□ 0.14
ATP2C1-204ENST00000428331 HNRNPUL2Q1KMD3 747 aaKnown RBP15.93■□□□□ 0.14
ATP2C1-204ENST00000428331 CEP162Q5TB80 1403 aa15.92■□□□□ 0.14
ATP2C1-204ENST00000428331 TNIKQ9UKE5 1360 aa15.88■□□□□ 0.13
ATP2C1-204ENST00000428331 WRNQ14191 1432 aaPredicted RBP eCLIP15.86■□□□□ 0.13
ATP2C1-204ENST00000428331 EEA1Q15075 1411 aa15.84■□□□□ 0.13
ATP2C1-204ENST00000428331 WIZO95785 1651 aa15.84■□□□□ 0.13
ATP2C1-204ENST00000428331 BAZ1AQ9NRL2 1556 aaPredicted RBP15.81■□□□□ 0.12
ATP2C1-204ENST00000428331 MIER1Q8N108 512 aa15.78■□□□□ 0.12
ATP2C1-204ENST00000428331 RANGAP1P46060 587 aaPredicted RBP15.78■□□□□ 0.12
ATP2C1-204ENST00000428331 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
ATP2C1-204ENST00000428331 SOGA1O94964 1423 aa15.73■□□□□ 0.11
ATP2C1-204ENST00000428331 GOLGA3Q08378 1498 aa15.73■□□□□ 0.11
ATP2C1-204ENST00000428331 ABCC8Q09428 1581 aa15.72■□□□□ 0.11
ATP2C1-204ENST00000428331 CLSPNQ9HAW4 1339 aa15.67■□□□□ 0.1
ATP2C1-204ENST00000428331 TOP2AP11388 1531 aaKnown RBP15.66■□□□□ 0.1
ATP2C1-204ENST00000428331 CLIP1P30622 1438 aa15.63■□□□□ 0.09
ATP2C1-204ENST00000428331 CEP164Q9UPV0 1460 aa15.6■□□□□ 0.09
ATP2C1-204ENST00000428331 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
ATP2C1-204ENST00000428331 SMARCA2P51531 1590 aa15.52■□□□□ 0.08
ATP2C1-204ENST00000428331 VPS8Q8N3P4 1428 aa15.52■□□□□ 0.07
ATP2C1-204ENST00000428331 SMARCA4P51532 1647 aa15.5■□□□□ 0.07
ATP2C1-204ENST00000428331 PABPN1Q86U42 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
ATP2C1-204ENST00000428331 EIF4G1Q04637 1599 aaKnown RBP15.5■□□□□ 0.07
ATP2C1-204ENST00000428331 ITGAEP38570 1179 aa15.46■□□□□ 0.07
ATP2C1-204ENST00000428331 NEFLP07196 543 aa15.46■□□□□ 0.07
ATP2C1-204ENST00000428331 SUPT16HQ9Y5B9 1047 aaKnown RBP15.42■□□□□ 0.06
ATP2C1-204ENST00000428331 BAZ1BQ9UIG0 1483 aaKnown RBP15.38■□□□□ 0.05
ATP2C1-204ENST00000428331 KIF21BO75037 1637 aa15.33■□□□□ 0.05
ATP2C1-204ENST00000428331 DHX57Q6P158 1386 aaKnown RBP15.32■□□□□ 0.04
ATP2C1-204ENST00000428331 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
ATP2C1-204ENST00000428331 BCANQ96GW7 911 aa15.31■□□□□ 0.04
ATP2C1-204ENST00000428331 ATP1B4Q9UN42 357 aaPredicted RBP15.26■□□□□ 0.03
ATP2C1-204ENST00000428331 ANP32EQ9BTT0 268 aa15.26■□□□□ 0.03
ATP2C1-204ENST00000428331 FKBP8Q14318 412 aa15.25■□□□□ 0.03
ATP2C1-204ENST00000428331 KANK4Q5T7N3 995 aaPredicted RBP15.25■□□□□ 0.03
ATP2C1-204ENST00000428331 TSHZ2Q9NRE2 1034 aa15.23■□□□□ 0.03
ATP2C1-204ENST00000428331 DDX10Q13206 875 aaKnown RBP15.23■□□□□ 0.03
ATP2C1-204ENST00000428331 CCNB3Q8WWL7 1395 aa15.23■□□□□ 0.03
ATP2C1-204ENST00000428331 FAM50AQ14320 339 aaKnown RBP15.23■□□□□ 0.03
ATP2C1-204ENST00000428331 SYNJ1O43426 1573 aa15.22■□□□□ 0.03
ATP2C1-204ENST00000428331 ANP32CO43423 234 aa15.22■□□□□ 0.03
ATP2C1-204ENST00000428331 ERICH6Q7L0X2 663 aa15.19■□□□□ 0.02
ATP2C1-204ENST00000428331 KIF27Q86VH2 1401 aa15.17■□□□□ 0.02
ATP2C1-204ENST00000428331 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
ATP2C1-204ENST00000428331 RRBP1Q9P2E9 1410 aaKnown RBP15.11■□□□□ 0.01
ATP2C1-204ENST00000428331 RAB3GAP2Q9H2M9 1393 aa15.1■□□□□ 0.01
ATP2C1-204ENST00000428331 TIMELESSQ9UNS1 1208 aa15.09■□□□□ 0.01
ATP2C1-204ENST00000428331 TRIM52Q96A61 297 aa15.09■□□□□ 0.01
ATP2C1-204ENST00000428331 ERICH3Q5RHP9 1530 aa15.08■□□□□ 0.01
ATP2C1-204ENST00000428331 KCNH8Q96L42 1107 aa15.08■□□□□ 0
ATP2C1-204ENST00000428331 SETD5Q9C0A6 1442 aa15.07■□□□□ 0
ATP2C1-204ENST00000428331 ARAP1Q96P48 1450 aa15.06■□□□□ 0
ATP2C1-204ENST00000428331 SIN3AQ96ST3 1273 aa15.06■□□□□ 0
ATP2C1-204ENST00000428331 PRXQ9BXM0 1461 aa15.06■□□□□ 0
ATP2C1-204ENST00000428331 PEG3Q9GZU2 1588 aa15.06■□□□□ 0
ATP2C1-204ENST00000428331 CCER2I3L3R5 266 aa15.04■□□□□ -0
ATP2C1-204ENST00000428331 CDK11AQ9UQ88 783 aaPredicted RBP15.04■□□□□ -0
ATP2C1-204ENST00000428331 TONSLQ96HA7 1378 aa15.03■□□□□ -0
ATP2C1-204ENST00000428331 TOP2BQ02880 1626 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms