RNA–Protein interactions for RNA: ENST00000428128.1

RGPD1-203, Transcript of RANBP2-like and GRIP domain containing 1, humanhuman

TSL 1 (best)

Gene RGPD1, Length 3,479 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD1-203ENST00000428128 AEBP2Q6ZN18 517 aaPredicted RBP8.41□□□□□ -1.06
RGPD1-203ENST00000428128 CHIC1Q5VXU3 224 aa8.01□□□□□ -1.13
RGPD1-203ENST00000428128 SENP3Q9H4L4 574 aaPredicted RBP7.42□□□□□ -1.22
RGPD1-203ENST00000428128 CCDC180Q9P1Z9 1646 aa7.21□□□□□ -1.26
RGPD1-203ENST00000428128 POTEDQ86YR6 584 aa7.1□□□□□ -1.27
RGPD1-203ENST00000428128 PHF23Q9BUL5 403 aaPredicted RBP7.09□□□□□ -1.27
RGPD1-203ENST00000428128 SLC24A1O60721 1099 aa7.04□□□□□ -1.28
RGPD1-203ENST00000428128 NISCHQ9Y2I1 1504 aa7.01□□□□□ -1.29
RGPD1-203ENST00000428128 SHROOM4Q9ULL8 1493 aa6.89□□□□□ -1.31
RGPD1-203ENST00000428128 MYO15BQ96JP2 1530 aa6.84□□□□□ -1.31
RGPD1-203ENST00000428128 FOXD1Q16676 465 aa6.81□□□□□ -1.32
RGPD1-203ENST00000428128 MSH5O43196 834 aa6.75□□□□□ -1.33
RGPD1-203ENST00000428128 UNC13AQ9UPW8 1703 aa6.58□□□□□ -1.36
RGPD1-203ENST00000428128 DCAF1Q9Y4B6 1507 aa6.5□□□□□ -1.37
RGPD1-203ENST00000428128 EHMT2Q96KQ7 1210 aa6.5□□□□□ -1.37
RGPD1-203ENST00000428128 NACADO15069 1562 aa6.48□□□□□ -1.37
RGPD1-203ENST00000428128 AMER1Q5JTC6 1135 aaPredicted RBP6.45□□□□□ -1.38
RGPD1-203ENST00000428128 NCBP3Q53F19 620 aaKnown RBP6.42□□□□□ -1.38
RGPD1-203ENST00000428128 CSRNP3Q8WYN3 585 aa6.4□□□□□ -1.38
RGPD1-203ENST00000428128 RB1CC1Q8TDY2 1594 aa6.4□□□□□ -1.38
RGPD1-203ENST00000428128 RTN4Q9NQC3 1192 aaKnown RBP6.38□□□□□ -1.39
RGPD1-203ENST00000428128 PLPPR3Q6T4P5 718 aa6.37□□□□□ -1.39
RGPD1-203ENST00000428128 DAXXQ9UER7 740 aaPredicted RBP6.34□□□□□ -1.39
RGPD1-203ENST00000428128 KCNA4P22459 653 aa6.33□□□□□ -1.4
RGPD1-203ENST00000428128 BICRAQ9NZM4 1560 aa6.31□□□□□ -1.4
RGPD1-203ENST00000428128 DNAJC5Q9H3Z4 198 aa6.13□□□□□ -1.43
RGPD1-203ENST00000428128 PIAS4Q8N2W9 510 aaPredicted RBP6.12□□□□□ -1.43
RGPD1-203ENST00000428128 CUX2O14529 1486 aa6.12□□□□□ -1.43
RGPD1-203ENST00000428128 ARXQ96QS3 562 aa6.12□□□□□ -1.43
RGPD1-203ENST00000428128 PEG3Q9GZU2 1588 aa6.12□□□□□ -1.43
RGPD1-203ENST00000428128 PRDM2Q13029 1718 aa6.1□□□□□ -1.43
RGPD1-203ENST00000428128 SMARCA2P51531 1590 aa6.07□□□□□ -1.44
RGPD1-203ENST00000428128 SLC4A1APQ9BWU0 796 aaKnown RBP6.06□□□□□ -1.44
RGPD1-203ENST00000428128 WDR97A6NE52 1622 aa6.02□□□□□ -1.45
RGPD1-203ENST00000428128 HMGXB3Q12766 1538 aa5.99□□□□□ -1.45
RGPD1-203ENST00000428128 THOC2Q8NI27 1593 aaKnown RBP5.98□□□□□ -1.45
RGPD1-203ENST00000428128 CC2D2AQ9P2K1 1620 aa5.95□□□□□ -1.46
RGPD1-203ENST00000428128 TAOK2Q9UL54 1235 aa5.95□□□□□ -1.46
RGPD1-203ENST00000428128 EIF4G1Q04637 1599 aaKnown RBP5.95□□□□□ -1.46
RGPD1-203ENST00000428128 BCANQ96GW7 911 aa5.92□□□□□ -1.46
RGPD1-203ENST00000428128 ZCCHC6Q5VYS8 1495 aaKnown RBP5.91□□□□□ -1.46
RGPD1-203ENST00000428128 PPP6R1Q9UPN7 881 aa5.91□□□□□ -1.46
RGPD1-203ENST00000428128 PRKCSHP14314 528 aaPredicted RBP5.91□□□□□ -1.46
RGPD1-203ENST00000428128 DNAJC5BQ9UF47 199 aa5.9□□□□□ -1.46
RGPD1-203ENST00000428128 ZBTB22O15209 634 aa5.9□□□□□ -1.47
RGPD1-203ENST00000428128 BAZ1BQ9UIG0 1483 aaKnown RBP5.89□□□□□ -1.47
RGPD1-203ENST00000428128 TIMELESSQ9UNS1 1208 aa5.89□□□□□ -1.47
RGPD1-203ENST00000428128 PLCB2Q00722 1185 aa5.88□□□□□ -1.47
RGPD1-203ENST00000428128 ERICH6Q7L0X2 663 aa5.87□□□□□ -1.47
RGPD1-203ENST00000428128 DMRT2Q9Y5R5 561 aa5.87□□□□□ -1.47
RGPD1-203ENST00000428128 APLP2Q06481 763 aa5.86□□□□□ -1.47
RGPD1-203ENST00000428128 ABCC9O60706 1549 aa5.85□□□□□ -1.47
RGPD1-203ENST00000428128 LAMC3Q9Y6N6 1575 aa5.85□□□□□ -1.47
RGPD1-203ENST00000428128 ADRA2BP18089 450 aa5.83□□□□□ -1.48
RGPD1-203ENST00000428128 HOMEZQ8IX15 550 aa5.8□□□□□ -1.48
RGPD1-203ENST00000428128 VSIG10Q8N0Z9 540 aa5.79□□□□□ -1.48
RGPD1-203ENST00000428128 WDR62O43379 1518 aa5.79□□□□□ -1.48
RGPD1-203ENST00000428128 NCAPD3P42695 1498 aa5.77□□□□□ -1.49
RGPD1-203ENST00000428128 TTBK1Q5TCY1 1321 aaPredicted RBP5.77□□□□□ -1.49
RGPD1-203ENST00000428128 CACNB1Q02641 598 aaPredicted RBP5.72□□□□□ -1.49
RGPD1-203ENST00000428128 TULP1O00294 542 aaPredicted RBP5.71□□□□□ -1.5
RGPD1-203ENST00000428128 TPRNQ4KMQ1 711 aa5.71□□□□□ -1.5
RGPD1-203ENST00000428128 GTF3C3Q9Y5Q9 886 aa5.71□□□□□ -1.5
RGPD1-203ENST00000428128 RNF39Q9H2S5 420 aa5.67□□□□□ -1.5
RGPD1-203ENST00000428128 NPM3O75607 178 aaKnown RBP5.66□□□□□ -1.5
RGPD1-203ENST00000428128 PPP4R3CPQ6ZMV5 832 aa5.64□□□□□ -1.51
RGPD1-203ENST00000428128 SMARCA4P51532 1647 aa5.64□□□□□ -1.51
RGPD1-203ENST00000428128 KIF21AQ7Z4S6 1674 aa5.64□□□□□ -1.51
RGPD1-203ENST00000428128 SCAF1Q9H7N4 1312 aaKnown RBP5.64□□□□□ -1.51
RGPD1-203ENST00000428128 CECR2Q9BXF3 1484 aa5.64□□□□□ -1.51
RGPD1-203ENST00000428128 TMEM132AQ24JP5 1023 aa5.64□□□□□ -1.51
RGPD1-203ENST00000428128 C1QBPQ07021 282 aaKnown RBP5.62□□□□□ -1.51
RGPD1-203ENST00000428128 PELP1Q8IZL8 1130 aaKnown RBP5.62□□□□□ -1.51
RGPD1-203ENST00000428128 FOXD4L1Q9NU39 408 aa5.62□□□□□ -1.51
RGPD1-203ENST00000428128 HAP1P54257 671 aaPredicted RBP5.6□□□□□ -1.51
RGPD1-203ENST00000428128 MYT1Q01538 1121 aa5.6□□□□□ -1.51
RGPD1-203ENST00000428128 KDM2AQ9Y2K7 1162 aa5.59□□□□□ -1.51
RGPD1-203ENST00000428128 BAZ1AQ9NRL2 1556 aaPredicted RBP5.58□□□□□ -1.52
RGPD1-203ENST00000428128 RANGAP1P46060 587 aaPredicted RBP5.58□□□□□ -1.52
RGPD1-203ENST00000428128 SCRIBQ14160 1630 aa5.57□□□□□ -1.52
RGPD1-203ENST00000428128 SHROOM2Q13796 1616 aa5.57□□□□□ -1.52
RGPD1-203ENST00000428128 HOXD11P31277 338 aaPredicted RBP5.57□□□□□ -1.52
RGPD1-203ENST00000428128 FKBP8Q14318 412 aa5.56□□□□□ -1.52
RGPD1-203ENST00000428128 FBXO3Q9UK99 471 aa5.55□□□□□ -1.52
RGPD1-203ENST00000428128 CLASP1Q7Z460 1538 aa5.54□□□□□ -1.52
RGPD1-203ENST00000428128 ATXN8OSP0DMR3 200 aa5.52□□□□□ -1.53
RGPD1-203ENST00000428128 NESP48681 1621 aa5.5□□□□□ -1.53
RGPD1-203ENST00000428128 RIMBP3CA6NJZ7 1639 aa5.48□□□□□ -1.53
RGPD1-203ENST00000428128 RIMBP3BA6NNM3 1639 aa5.48□□□□□ -1.53
RGPD1-203ENST00000428128 RIMBP3Q9UFD9 1639 aa5.48□□□□□ -1.53
RGPD1-203ENST00000428128 TARBP1Q13395 1621 aaKnown RBP5.48□□□□□ -1.53
RGPD1-203ENST00000428128 KLHL34Q8N239 644 aa5.48□□□□□ -1.53
RGPD1-203ENST00000428128 ATAD2BQ9ULI0 1458 aa5.47□□□□□ -1.53
RGPD1-203ENST00000428128 PODXL2Q9NZ53 605 aa5.46□□□□□ -1.53
RGPD1-203ENST00000428128 RSF1Q96T23 1441 aaPredicted RBP5.46□□□□□ -1.54
RGPD1-203ENST00000428128 MRC2Q9UBG0 1479 aa5.45□□□□□ -1.54
RGPD1-203ENST00000428128 POTEHQ6S545 545 aa5.44□□□□□ -1.54
RGPD1-203ENST00000428128 BBXQ8WY36 941 aaPredicted RBP5.43□□□□□ -1.54
RGPD1-203ENST00000428128 KIF13AQ9H1H9 1805 aa5.43□□□□□ -1.54
RGPD1-203ENST00000428128 FBLN2P98095 1184 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms