RNA–Protein interactions for RNA: ENST00000427276.1

LINC01108-201, Transcript of long intergenic non-protein coding RNA 1108, humanhuman

TSL 2 BASIC

Gene LINC01108, Length 3,152 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01108-201ENST00000427276 NISCHQ9Y2I1 1504 aa14.06□□□□□ -0.16
LINC01108-201ENST00000427276 SHROOM4Q9ULL8 1493 aa12.84□□□□□ -0.35
LINC01108-201ENST00000427276 SUPT5HO00267 1087 aaKnown RBP12.79□□□□□ -0.36
LINC01108-201ENST00000427276 PCGF6Q9BYE7 350 aa12.51□□□□□ -0.41
LINC01108-201ENST00000427276 HRCP23327 699 aa12.47□□□□□ -0.41
LINC01108-201ENST00000427276 PPARGC1BQ86YN6 1023 aaKnown RBP12.44□□□□□ -0.42
LINC01108-201ENST00000427276 DCAF8L2P0C7V8 631 aa12.39□□□□□ -0.43
LINC01108-201ENST00000427276 CHIC1Q5VXU3 224 aa12.27□□□□□ -0.45
LINC01108-201ENST00000427276 MYO15BQ96JP2 1530 aa12.21□□□□□ -0.46
LINC01108-201ENST00000427276 LOC105371045A0A1W2PR82 267 aa12.16□□□□□ -0.46
LINC01108-201ENST00000427276 EHMT2Q96KQ7 1210 aa12.05□□□□□ -0.48
LINC01108-201ENST00000427276 ABCC9O60706 1549 aa12.04□□□□□ -0.48
LINC01108-201ENST00000427276 CCDC180Q9P1Z9 1646 aa11.97□□□□□ -0.49
LINC01108-201ENST00000427276 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
LINC01108-201ENST00000427276 FAM9AQ8IZU1 332 aaPredicted RBP11.92□□□□□ -0.5
LINC01108-201ENST00000427276 ZCCHC6Q5VYS8 1495 aaKnown RBP11.91□□□□□ -0.5
LINC01108-201ENST00000427276 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
LINC01108-201ENST00000427276 PELP1Q8IZL8 1130 aaKnown RBP11.82□□□□□ -0.52
LINC01108-201ENST00000427276 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
LINC01108-201ENST00000427276 DCAF1Q9Y4B6 1507 aa11.79□□□□□ -0.52
LINC01108-201ENST00000427276 ZEB1P37275 1124 aaPredicted RBP11.76□□□□□ -0.53
LINC01108-201ENST00000427276 TRIM41Q8WV44 630 aa11.72□□□□□ -0.53
LINC01108-201ENST00000427276 TTBK1Q5TCY1 1321 aaPredicted RBP11.7□□□□□ -0.54
LINC01108-201ENST00000427276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.63□□□□□ -0.55
LINC01108-201ENST00000427276 CCER1Q8TC90 406 aaPredicted RBP11.63□□□□□ -0.55
LINC01108-201ENST00000427276 NEUROD1Q13562 356 aa11.57□□□□□ -0.56
LINC01108-201ENST00000427276 GTF3C3Q9Y5Q9 886 aa11.55□□□□□ -0.56
LINC01108-201ENST00000427276 ACIN1Q9UKV3 1341 aaKnown RBP11.53□□□□□ -0.56
LINC01108-201ENST00000427276 YTHDC1Q96MU7 727 aaKnown RBP11.53□□□□□ -0.56
LINC01108-201ENST00000427276 CENPBP07199 599 aaPredicted RBP11.5□□□□□ -0.57
LINC01108-201ENST00000427276 DIEXFQ68CQ4 756 aaKnown RBP11.49□□□□□ -0.57
LINC01108-201ENST00000427276 RB1CC1Q8TDY2 1594 aa11.43□□□□□ -0.58
LINC01108-201ENST00000427276 DNAJC5BQ9UF47 199 aa11.36□□□□□ -0.59
LINC01108-201ENST00000427276 AEBP2Q6ZN18 517 aaPredicted RBP11.34□□□□□ -0.59
LINC01108-201ENST00000427276 NACADO15069 1562 aa11.34□□□□□ -0.59
LINC01108-201ENST00000427276 RSF1Q96T23 1441 aaPredicted RBP11.31□□□□□ -0.6
LINC01108-201ENST00000427276 SCRIBQ14160 1630 aa11.28□□□□□ -0.6
LINC01108-201ENST00000427276 MYT1Q01538 1121 aa11.28□□□□□ -0.6
LINC01108-201ENST00000427276 HNRNPUL2Q1KMD3 747 aaKnown RBP11.24□□□□□ -0.61
LINC01108-201ENST00000427276 UBTFP17480 764 aaKnown RBP11.24□□□□□ -0.61
LINC01108-201ENST00000427276 PLPPR3Q6T4P5 718 aa11.24□□□□□ -0.61
LINC01108-201ENST00000427276 ZNF316A6NFI3 1004 aaPredicted RBP11.22□□□□□ -0.61
LINC01108-201ENST00000427276 RANGAP1P46060 587 aaPredicted RBP11.22□□□□□ -0.61
LINC01108-201ENST00000427276 PABPN1Q86U42 306 aaKnown RBP eCLIP11.2□□□□□ -0.62
LINC01108-201ENST00000427276 MIER1Q8N108 512 aa11.19□□□□□ -0.62
LINC01108-201ENST00000427276 UNC13AQ9UPW8 1703 aa11.16□□□□□ -0.62
LINC01108-201ENST00000427276 CECR2Q9BXF3 1484 aa11.13□□□□□ -0.63
LINC01108-201ENST00000427276 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
LINC01108-201ENST00000427276 BICRAQ9NZM4 1560 aa11.1□□□□□ -0.63
LINC01108-201ENST00000427276 APLP2Q06481 763 aa11.06□□□□□ -0.64
LINC01108-201ENST00000427276 MROH2BQ7Z745 1585 aa11.05□□□□□ -0.64
LINC01108-201ENST00000427276 CEP162Q5TB80 1403 aa11.02□□□□□ -0.65
LINC01108-201ENST00000427276 WIZO95785 1651 aa11.01□□□□□ -0.65
LINC01108-201ENST00000427276 BCANQ96GW7 911 aa10.99□□□□□ -0.65
LINC01108-201ENST00000427276 CSRNP3Q8WYN3 585 aa10.99□□□□□ -0.65
LINC01108-201ENST00000427276 SOGA1O94964 1423 aa10.96□□□□□ -0.66
LINC01108-201ENST00000427276 ABCC8Q09428 1581 aa10.96□□□□□ -0.66
LINC01108-201ENST00000427276 CCDC88BA6NC98 1476 aa10.94□□□□□ -0.66
LINC01108-201ENST00000427276 ITGAEP38570 1179 aa10.93□□□□□ -0.66
LINC01108-201ENST00000427276 DAXXQ9UER7 740 aaPredicted RBP10.93□□□□□ -0.66
LINC01108-201ENST00000427276 SUPT16HQ9Y5B9 1047 aaKnown RBP10.91□□□□□ -0.66
LINC01108-201ENST00000427276 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
LINC01108-201ENST00000427276 TNIKQ9UKE5 1360 aa10.88□□□□□ -0.67
LINC01108-201ENST00000427276 RTN4Q9NQC3 1192 aaKnown RBP10.87□□□□□ -0.67
LINC01108-201ENST00000427276 CC2D2AQ9P2K1 1620 aa10.87□□□□□ -0.67
LINC01108-201ENST00000427276 WRNQ14191 1432 aaPredicted RBP eCLIP10.85□□□□□ -0.67
LINC01108-201ENST00000427276 EIF4G1Q04637 1599 aaKnown RBP10.83□□□□□ -0.68
LINC01108-201ENST00000427276 TSHZ2Q9NRE2 1034 aa10.83□□□□□ -0.68
LINC01108-201ENST00000427276 KCNH8Q96L42 1107 aa10.81□□□□□ -0.68
LINC01108-201ENST00000427276 BAZ1AQ9NRL2 1556 aaPredicted RBP10.81□□□□□ -0.68
LINC01108-201ENST00000427276 ANP32EQ9BTT0 268 aa10.8□□□□□ -0.68
LINC01108-201ENST00000427276 FKBP8Q14318 412 aa10.8□□□□□ -0.68
LINC01108-201ENST00000427276 ERICH6Q7L0X2 663 aa10.79□□□□□ -0.68
LINC01108-201ENST00000427276 CLIP1P30622 1438 aa10.78□□□□□ -0.68
LINC01108-201ENST00000427276 GOLGA3Q08378 1498 aa10.77□□□□□ -0.68
LINC01108-201ENST00000427276 PHF23Q9BUL5 403 aaPredicted RBP10.77□□□□□ -0.68
LINC01108-201ENST00000427276 NEFLP07196 543 aa10.75□□□□□ -0.69
LINC01108-201ENST00000427276 HIRIP3Q9BW71 556 aaPredicted RBP10.75□□□□□ -0.69
LINC01108-201ENST00000427276 BCL11AQ9H165 835 aa10.75□□□□□ -0.69
LINC01108-201ENST00000427276 DDX10Q13206 875 aaKnown RBP10.74□□□□□ -0.69
LINC01108-201ENST00000427276 TRIM52Q96A61 297 aa10.73□□□□□ -0.69
LINC01108-201ENST00000427276 SMARCA2P51531 1590 aa10.71□□□□□ -0.7
LINC01108-201ENST00000427276 ATP1B4Q9UN42 357 aaPredicted RBP10.7□□□□□ -0.7
LINC01108-201ENST00000427276 TOP2AP11388 1531 aaKnown RBP10.7□□□□□ -0.7
LINC01108-201ENST00000427276 CLSPNQ9HAW4 1339 aa10.7□□□□□ -0.7
LINC01108-201ENST00000427276 EEA1Q15075 1411 aa10.69□□□□□ -0.7
LINC01108-201ENST00000427276 KANK4Q5T7N3 995 aaPredicted RBP10.69□□□□□ -0.7
LINC01108-201ENST00000427276 DHX57Q6P158 1386 aaKnown RBP10.66□□□□□ -0.7
LINC01108-201ENST00000427276 VPS8Q8N3P4 1428 aa10.66□□□□□ -0.7
LINC01108-201ENST00000427276 CEP164Q9UPV0 1460 aa10.65□□□□□ -0.7
LINC01108-201ENST00000427276 SMARCA4P51532 1647 aa10.65□□□□□ -0.71
LINC01108-201ENST00000427276 IRX6P78412 446 aaPredicted RBP10.65□□□□□ -0.71
LINC01108-201ENST00000427276 RBM19Q9Y4C8 960 aaKnown RBP10.63□□□□□ -0.71
LINC01108-201ENST00000427276 FAM50AQ14320 339 aaKnown RBP10.62□□□□□ -0.71
LINC01108-201ENST00000427276 SIN3AQ96ST3 1273 aa10.62□□□□□ -0.71
LINC01108-201ENST00000427276 RAPGEF2Q9Y4G8 1499 aa10.62□□□□□ -0.71
LINC01108-201ENST00000427276 ANP32CO43423 234 aa10.58□□□□□ -0.72
LINC01108-201ENST00000427276 SYNJ1O43426 1573 aa10.57□□□□□ -0.72
LINC01108-201ENST00000427276 CNGB1Q14028 1251 aaPredicted RBP10.55□□□□□ -0.72
LINC01108-201ENST00000427276 P3H3Q8IVL6 736 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms