RNA–Protein interactions for RNA: ENST00000409532.5

ITGA6-203, Transcript of integrin subunit alpha 6, humanhuman

TSL 2 BASIC

Gene ITGA6, Length 3,544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA6-203ENST00000409532 NISCHQ9Y2I1 1504 aa22.85■■□□□ 1.25
ITGA6-203ENST00000409532 SHROOM4Q9ULL8 1493 aa19.98■□□□□ 0.79
ITGA6-203ENST00000409532 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.74
ITGA6-203ENST00000409532 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
ITGA6-203ENST00000409532 ZCCHC6Q5VYS8 1495 aaKnown RBP19.29■□□□□ 0.68
ITGA6-203ENST00000409532 CCDC180Q9P1Z9 1646 aa19.2■□□□□ 0.66
ITGA6-203ENST00000409532 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
ITGA6-203ENST00000409532 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
ITGA6-203ENST00000409532 PCGF6Q9BYE7 350 aa18.6■□□□□ 0.57
ITGA6-203ENST00000409532 LOC105371045A0A1W2PR82 267 aa18.55■□□□□ 0.56
ITGA6-203ENST00000409532 DCAF1Q9Y4B6 1507 aa18.53■□□□□ 0.56
ITGA6-203ENST00000409532 HRCP23327 699 aa18.47■□□□□ 0.55
ITGA6-203ENST00000409532 SCRIBQ14160 1630 aa18.33■□□□□ 0.52
ITGA6-203ENST00000409532 PPARGC1BQ86YN6 1023 aaKnown RBP18.3■□□□□ 0.52
ITGA6-203ENST00000409532 EHMT2Q96KQ7 1210 aa18.23■□□□□ 0.51
ITGA6-203ENST00000409532 FAM9AQ8IZU1 332 aaPredicted RBP18.22■□□□□ 0.51
ITGA6-203ENST00000409532 ABCC9O60706 1549 aa18.2■□□□□ 0.5
ITGA6-203ENST00000409532 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
ITGA6-203ENST00000409532 TRIM41Q8WV44 630 aa18.16■□□□□ 0.5
ITGA6-203ENST00000409532 TRIM26Q12899 539 aaPredicted RBP18.04■□□□□ 0.48
ITGA6-203ENST00000409532 RB1CC1Q8TDY2 1594 aa18.03■□□□□ 0.48
ITGA6-203ENST00000409532 CECR2Q9BXF3 1484 aa17.97■□□□□ 0.47
ITGA6-203ENST00000409532 MROH2BQ7Z745 1585 aa17.86■□□□□ 0.45
ITGA6-203ENST00000409532 NACADO15069 1562 aa17.82■□□□□ 0.44
ITGA6-203ENST00000409532 WIZO95785 1651 aa17.78■□□□□ 0.44
ITGA6-203ENST00000409532 TTBK1Q5TCY1 1321 aaPredicted RBP17.63■□□□□ 0.41
ITGA6-203ENST00000409532 ZEB1P37275 1124 aaPredicted RBP17.58■□□□□ 0.41
ITGA6-203ENST00000409532 BAZ1AQ9NRL2 1556 aaPredicted RBP17.52■□□□□ 0.39
ITGA6-203ENST00000409532 PABPN1Q86U42 306 aaKnown RBP eCLIP17.5■□□□□ 0.39
ITGA6-203ENST00000409532 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.49■□□□□ 0.39
ITGA6-203ENST00000409532 ABCC8Q09428 1581 aa17.49■□□□□ 0.39
ITGA6-203ENST00000409532 CCDC88BA6NC98 1476 aa17.42■□□□□ 0.38
ITGA6-203ENST00000409532 CCER1Q8TC90 406 aaPredicted RBP17.41■□□□□ 0.38
ITGA6-203ENST00000409532 SMARCA4P51532 1647 aa17.37■□□□□ 0.37
ITGA6-203ENST00000409532 TOP2AP11388 1531 aaKnown RBP17.36■□□□□ 0.37
ITGA6-203ENST00000409532 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
ITGA6-203ENST00000409532 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
ITGA6-203ENST00000409532 SOGA1O94964 1423 aa17.36■□□□□ 0.37
ITGA6-203ENST00000409532 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
ITGA6-203ENST00000409532 UNC13AQ9UPW8 1703 aa17.31■□□□□ 0.36
ITGA6-203ENST00000409532 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
ITGA6-203ENST00000409532 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
ITGA6-203ENST00000409532 CEP162Q5TB80 1403 aa17.26■□□□□ 0.35
ITGA6-203ENST00000409532 RANGAP1P46060 587 aaPredicted RBP17.21■□□□□ 0.35
ITGA6-203ENST00000409532 TNIKQ9UKE5 1360 aa17.15■□□□□ 0.34
ITGA6-203ENST00000409532 SCAF1Q9H7N4 1312 aaKnown RBP17.14■□□□□ 0.33
ITGA6-203ENST00000409532 WRNQ14191 1432 aaPredicted RBP eCLIP17.11■□□□□ 0.33
ITGA6-203ENST00000409532 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
ITGA6-203ENST00000409532 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
ITGA6-203ENST00000409532 DIEXFQ68CQ4 756 aaKnown RBP17.05■□□□□ 0.32
ITGA6-203ENST00000409532 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
ITGA6-203ENST00000409532 EEA1Q15075 1411 aa17.04■□□□□ 0.32
ITGA6-203ENST00000409532 SYNJ1O43426 1573 aa16.99■□□□□ 0.31
ITGA6-203ENST00000409532 NEUROD1Q13562 356 aa16.96■□□□□ 0.31
ITGA6-203ENST00000409532 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
ITGA6-203ENST00000409532 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.31
ITGA6-203ENST00000409532 APLP2Q06481 763 aa16.95■□□□□ 0.3
ITGA6-203ENST00000409532 CLIP1P30622 1438 aa16.93■□□□□ 0.3
ITGA6-203ENST00000409532 CEP164Q9UPV0 1460 aa16.92■□□□□ 0.3
ITGA6-203ENST00000409532 ACIN1Q9UKV3 1341 aaKnown RBP16.9■□□□□ 0.3
ITGA6-203ENST00000409532 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.29
ITGA6-203ENST00000409532 RAPGEF2Q9Y4G8 1499 aa16.88■□□□□ 0.29
ITGA6-203ENST00000409532 YTHDC1Q96MU7 727 aaKnown RBP16.85■□□□□ 0.29
ITGA6-203ENST00000409532 ZNF316A6NFI3 1004 aaPredicted RBP16.84■□□□□ 0.29
ITGA6-203ENST00000409532 GTF3C3Q9Y5Q9 886 aa16.82■□□□□ 0.28
ITGA6-203ENST00000409532 CENPBP07199 599 aaPredicted RBP16.8■□□□□ 0.28
ITGA6-203ENST00000409532 VPS8Q8N3P4 1428 aa16.8■□□□□ 0.28
ITGA6-203ENST00000409532 KIF21BO75037 1637 aa16.8■□□□□ 0.28
ITGA6-203ENST00000409532 MIER1Q8N108 512 aa16.7■□□□□ 0.26
ITGA6-203ENST00000409532 KANK4Q5T7N3 995 aaPredicted RBP16.69■□□□□ 0.26
ITGA6-203ENST00000409532 TOP2BQ02880 1626 aa16.68■□□□□ 0.26
ITGA6-203ENST00000409532 ITGAEP38570 1179 aa16.67■□□□□ 0.26
ITGA6-203ENST00000409532 PELP1Q8IZL8 1130 aaKnown RBP16.64■□□□□ 0.25
ITGA6-203ENST00000409532 CUX1P39880 1505 aa16.59■□□□□ 0.25
ITGA6-203ENST00000409532 PRXQ9BXM0 1461 aa16.58■□□□□ 0.24
ITGA6-203ENST00000409532 ARAP1Q96P48 1450 aa16.57■□□□□ 0.24
ITGA6-203ENST00000409532 BIVM-ERCC5R4GMW8 1640 aa16.56■□□□□ 0.24
ITGA6-203ENST00000409532 KIF27Q86VH2 1401 aa16.56■□□□□ 0.24
ITGA6-203ENST00000409532 NCAPD3P42695 1498 aa16.54■□□□□ 0.24
ITGA6-203ENST00000409532 ERICH3Q5RHP9 1530 aa16.51■□□□□ 0.23
ITGA6-203ENST00000409532 DHX57Q6P158 1386 aaKnown RBP16.5■□□□□ 0.23
ITGA6-203ENST00000409532 ATP1B4Q9UN42 357 aaPredicted RBP16.5■□□□□ 0.23
ITGA6-203ENST00000409532 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
ITGA6-203ENST00000409532 HMGXB3Q12766 1538 aa16.48■□□□□ 0.23
ITGA6-203ENST00000409532 CFTRP13569 1480 aa16.46■□□□□ 0.23
ITGA6-203ENST00000409532 CUX2O14529 1486 aa16.45■□□□□ 0.22
ITGA6-203ENST00000409532 ARHGAP35Q9NRY4 1499 aa16.44■□□□□ 0.22
ITGA6-203ENST00000409532 CCNB3Q8WWL7 1395 aa16.41■□□□□ 0.22
ITGA6-203ENST00000409532 IGF1RP08069 1367 aa16.4■□□□□ 0.22
ITGA6-203ENST00000409532 FAM50AQ14320 339 aaKnown RBP16.38■□□□□ 0.21
ITGA6-203ENST00000409532 CARMIL1Q5VZK9 1371 aa16.36■□□□□ 0.21
ITGA6-203ENST00000409532 RRBP1Q9P2E9 1410 aaKnown RBP16.36■□□□□ 0.21
ITGA6-203ENST00000409532 CLSPNQ9HAW4 1339 aa16.36■□□□□ 0.21
ITGA6-203ENST00000409532 CADPSQ9ULU8 1353 aa16.34■□□□□ 0.21
ITGA6-203ENST00000409532 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
ITGA6-203ENST00000409532 RAB3GAP2Q9H2M9 1393 aa16.31■□□□□ 0.2
ITGA6-203ENST00000409532 SIN3AQ96ST3 1273 aa16.28■□□□□ 0.2
ITGA6-203ENST00000409532 PHLDB1Q86UU1 1377 aa16.25■□□□□ 0.19
ITGA6-203ENST00000409532 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
ITGA6-203ENST00000409532 HIRIP3Q9BW71 556 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms