RNA–Protein interactions for RNA: ENST00000397417.6

IFT140-202, Transcript of intraflagellar transport 140, humanhuman

TSL 5

Gene IFT140, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-202ENST00000397417 DCAF8L2P0C7V8 631 aa20.7■□□□□ 0.9
IFT140-202ENST00000397417 NISCHQ9Y2I1 1504 aa20.51■□□□□ 0.87
IFT140-202ENST00000397417 SHROOM4Q9ULL8 1493 aa19.68■□□□□ 0.74
IFT140-202ENST00000397417 SUPT5HO00267 1087 aaKnown RBP19.61■□□□□ 0.73
IFT140-202ENST00000397417 EHMT2Q96KQ7 1210 aa19.08■□□□□ 0.64
IFT140-202ENST00000397417 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
IFT140-202ENST00000397417 TTBK1Q5TCY1 1321 aaPredicted RBP18.27■□□□□ 0.52
IFT140-202ENST00000397417 RANGAP1P46060 587 aaPredicted RBP18.14■□□□□ 0.49
IFT140-202ENST00000397417 PCGF6Q9BYE7 350 aa17.92■□□□□ 0.46
IFT140-202ENST00000397417 TRIM41Q8WV44 630 aa17.89■□□□□ 0.46
IFT140-202ENST00000397417 PPARGC1BQ86YN6 1023 aaKnown RBP17.87■□□□□ 0.45
IFT140-202ENST00000397417 ABCC9O60706 1549 aa17.87■□□□□ 0.45
IFT140-202ENST00000397417 PABPN1Q86U42 306 aaKnown RBP eCLIP17.78■□□□□ 0.44
IFT140-202ENST00000397417 LOC105371045A0A1W2PR82 267 aa17.73■□□□□ 0.43
IFT140-202ENST00000397417 CCDC180Q9P1Z9 1646 aa17.72■□□□□ 0.43
IFT140-202ENST00000397417 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
IFT140-202ENST00000397417 ATP1B4Q9UN42 357 aaPredicted RBP17.57■□□□□ 0.4
IFT140-202ENST00000397417 CHIC1Q5VXU3 224 aa17.56■□□□□ 0.4
IFT140-202ENST00000397417 APLP2Q06481 763 aa17.55■□□□□ 0.4
IFT140-202ENST00000397417 ZCCHC6Q5VYS8 1495 aaKnown RBP17.27■□□□□ 0.36
IFT140-202ENST00000397417 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
IFT140-202ENST00000397417 ITGAEP38570 1179 aa17.17■□□□□ 0.34
IFT140-202ENST00000397417 HRCP23327 699 aa17.1■□□□□ 0.33
IFT140-202ENST00000397417 HNRNPUL2Q1KMD3 747 aaKnown RBP17.03■□□□□ 0.32
IFT140-202ENST00000397417 SCRIBQ14160 1630 aa17■□□□□ 0.31
IFT140-202ENST00000397417 MYO15BQ96JP2 1530 aa16.94■□□□□ 0.3
IFT140-202ENST00000397417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.94■□□□□ 0.3
IFT140-202ENST00000397417 TRIM26Q12899 539 aaPredicted RBP16.92■□□□□ 0.3
IFT140-202ENST00000397417 DCAF1Q9Y4B6 1507 aa16.85■□□□□ 0.29
IFT140-202ENST00000397417 YTHDC1Q96MU7 727 aaKnown RBP16.85■□□□□ 0.29
IFT140-202ENST00000397417 ARID3CA6NKF2 412 aa16.79■□□□□ 0.28
IFT140-202ENST00000397417 P3H3Q8IVL6 736 aa16.78■□□□□ 0.28
IFT140-202ENST00000397417 CNGB1Q14028 1251 aaPredicted RBP16.76■□□□□ 0.27
IFT140-202ENST00000397417 FBLN2P98095 1184 aa16.73■□□□□ 0.27
IFT140-202ENST00000397417 MYT1LQ9UL68 1186 aa16.63■□□□□ 0.25
IFT140-202ENST00000397417 ZEB1P37275 1124 aaPredicted RBP16.61■□□□□ 0.25
IFT140-202ENST00000397417 FAM50AQ14320 339 aaKnown RBP16.59■□□□□ 0.25
IFT140-202ENST00000397417 POLR3GLQ9BT43 218 aa16.58■□□□□ 0.24
IFT140-202ENST00000397417 CSRNP3Q8WYN3 585 aa16.57■□□□□ 0.24
IFT140-202ENST00000397417 RSF1Q96T23 1441 aaPredicted RBP16.48■□□□□ 0.23
IFT140-202ENST00000397417 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
IFT140-202ENST00000397417 NACADO15069 1562 aa16.46■□□□□ 0.23
IFT140-202ENST00000397417 NEUROD1Q13562 356 aa16.44■□□□□ 0.22
IFT140-202ENST00000397417 CENPBP07199 599 aaPredicted RBP16.34■□□□□ 0.21
IFT140-202ENST00000397417 TRIM52Q96A61 297 aa16.33■□□□□ 0.2
IFT140-202ENST00000397417 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
IFT140-202ENST00000397417 ZNF326Q5BKZ1 582 aaKnown RBP16.26■□□□□ 0.19
IFT140-202ENST00000397417 ZNF777Q9ULD5 760 aaPredicted RBP16.25■□□□□ 0.19
IFT140-202ENST00000397417 DIEXFQ68CQ4 756 aaKnown RBP16.22■□□□□ 0.19
IFT140-202ENST00000397417 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
IFT140-202ENST00000397417 CHIC2Q9UKJ5 165 aa16.13■□□□□ 0.17
IFT140-202ENST00000397417 MROH2BQ7Z745 1585 aa16.11■□□□□ 0.17
IFT140-202ENST00000397417 SLC4A1APQ9BWU0 796 aaKnown RBP16.1■□□□□ 0.17
IFT140-202ENST00000397417 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
IFT140-202ENST00000397417 HIRIP3Q9BW71 556 aaPredicted RBP16.04■□□□□ 0.16
IFT140-202ENST00000397417 SENP3Q9H4L4 574 aaPredicted RBP16.03■□□□□ 0.16
IFT140-202ENST00000397417 SOGA1O94964 1423 aa16.02■□□□□ 0.15
IFT140-202ENST00000397417 WRNQ14191 1432 aaPredicted RBP eCLIP16■□□□□ 0.15
IFT140-202ENST00000397417 PLPPR3Q6T4P5 718 aa15.99■□□□□ 0.15
IFT140-202ENST00000397417 UNC13AQ9UPW8 1703 aa15.99■□□□□ 0.15
IFT140-202ENST00000397417 NEFLP07196 543 aa15.97■□□□□ 0.15
IFT140-202ENST00000397417 ABCC8Q09428 1581 aa15.96■□□□□ 0.15
IFT140-202ENST00000397417 CHMP7Q8WUX9 453 aaPredicted RBP15.96■□□□□ 0.14
IFT140-202ENST00000397417 CLIP1P30622 1438 aa15.94■□□□□ 0.14
IFT140-202ENST00000397417 BCANQ96GW7 911 aa15.93■□□□□ 0.14
IFT140-202ENST00000397417 CEP162Q5TB80 1403 aa15.91■□□□□ 0.14
IFT140-202ENST00000397417 BAZ1AQ9NRL2 1556 aaPredicted RBP15.89■□□□□ 0.13
IFT140-202ENST00000397417 CCDC88BA6NC98 1476 aa15.88■□□□□ 0.13
IFT140-202ENST00000397417 WIZO95785 1651 aa15.88■□□□□ 0.13
IFT140-202ENST00000397417 ZNF316A6NFI3 1004 aaPredicted RBP15.88■□□□□ 0.13
IFT140-202ENST00000397417 KCNH8Q96L42 1107 aa15.88■□□□□ 0.13
IFT140-202ENST00000397417 RRP7BPQ9NSQ0 103 aa15.87■□□□□ 0.13
IFT140-202ENST00000397417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.87■□□□□ 0.13
IFT140-202ENST00000397417 SENP3-EIF4A1A0A087X0R7 540 aa15.84■□□□□ 0.13
IFT140-202ENST00000397417 BICRAQ9NZM4 1560 aa15.82■□□□□ 0.12
IFT140-202ENST00000397417 SCAF1Q9H7N4 1312 aaKnown RBP15.82■□□□□ 0.12
IFT140-202ENST00000397417 DDX10Q13206 875 aaKnown RBP15.8■□□□□ 0.12
IFT140-202ENST00000397417 GTF3C3Q9Y5Q9 886 aa15.8■□□□□ 0.12
IFT140-202ENST00000397417 MTUS2Q5JR59 1369 aa15.79■□□□□ 0.12
IFT140-202ENST00000397417 CHGAP10645 457 aaKnown RBP15.78■□□□□ 0.12
IFT140-202ENST00000397417 MYT1Q01538 1121 aa15.77■□□□□ 0.12
IFT140-202ENST00000397417 CDK11AQ9UQ88 783 aaPredicted RBP15.77■□□□□ 0.11
IFT140-202ENST00000397417 KDM2AQ9Y2K7 1162 aa15.76■□□□□ 0.11
IFT140-202ENST00000397417 TDRD9Q8NDG6 1382 aaKnown RBP15.76■□□□□ 0.11
IFT140-202ENST00000397417 ACIN1Q9UKV3 1341 aaKnown RBP15.75■□□□□ 0.11
IFT140-202ENST00000397417 KANK4Q5T7N3 995 aaPredicted RBP15.73■□□□□ 0.11
IFT140-202ENST00000397417 RUSC2Q8N2Y8 1516 aa15.73■□□□□ 0.11
IFT140-202ENST00000397417 GOLGA3Q08378 1498 aa15.72■□□□□ 0.11
IFT140-202ENST00000397417 CUX2O14529 1486 aa15.71■□□□□ 0.1
IFT140-202ENST00000397417 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
IFT140-202ENST00000397417 KIF27Q86VH2 1401 aa15.7■□□□□ 0.1
IFT140-202ENST00000397417 SALL2Q9Y467 1007 aaPredicted RBP15.69■□□□□ 0.1
IFT140-202ENST00000397417 SIN3AQ96ST3 1273 aa15.69■□□□□ 0.1
IFT140-202ENST00000397417 ANP32CO43423 234 aa15.68■□□□□ 0.1
IFT140-202ENST00000397417 BCL11AQ9H165 835 aa15.67■□□□□ 0.1
IFT140-202ENST00000397417 TNIKQ9UKE5 1360 aa15.66■□□□□ 0.1
IFT140-202ENST00000397417 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
IFT140-202ENST00000397417 TONSLQ96HA7 1378 aa15.64■□□□□ 0.09
IFT140-202ENST00000397417 RGL3Q3MIN7 710 aa15.63■□□□□ 0.09
IFT140-202ENST00000397417 MIER1Q8N108 512 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms