RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 NISCHQ9Y2I1 1504 aa21■□□□□ 0.95
SMAD9-202ENST00000379826 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
SMAD9-202ENST00000379826 SHROOM4Q9ULL8 1493 aa19.45■□□□□ 0.7
SMAD9-202ENST00000379826 SUPT5HO00267 1087 aaKnown RBP19.39■□□□□ 0.7
SMAD9-202ENST00000379826 PCGF6Q9BYE7 350 aa18.6■□□□□ 0.57
SMAD9-202ENST00000379826 EHMT2Q96KQ7 1210 aa18.42■□□□□ 0.54
SMAD9-202ENST00000379826 HRCP23327 699 aa18.26■□□□□ 0.51
SMAD9-202ENST00000379826 CHIC1Q5VXU3 224 aa18.17■□□□□ 0.5
SMAD9-202ENST00000379826 PPARGC1BQ86YN6 1023 aaKnown RBP18.15■□□□□ 0.5
SMAD9-202ENST00000379826 FAM9AQ8IZU1 332 aaPredicted RBP18.13■□□□□ 0.49
SMAD9-202ENST00000379826 LOC105371045A0A1W2PR82 267 aa18.05■□□□□ 0.48
SMAD9-202ENST00000379826 TRIM41Q8WV44 630 aa17.85■□□□□ 0.45
SMAD9-202ENST00000379826 TTBK1Q5TCY1 1321 aaPredicted RBP17.85■□□□□ 0.45
SMAD9-202ENST00000379826 TRIM26Q12899 539 aaPredicted RBP17.83■□□□□ 0.44
SMAD9-202ENST00000379826 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
SMAD9-202ENST00000379826 ZEB1P37275 1124 aaPredicted RBP17.73■□□□□ 0.43
SMAD9-202ENST00000379826 ZCCHC6Q5VYS8 1495 aaKnown RBP17.66■□□□□ 0.42
SMAD9-202ENST00000379826 CCER1Q8TC90 406 aaPredicted RBP17.6■□□□□ 0.41
SMAD9-202ENST00000379826 PELP1Q8IZL8 1130 aaKnown RBP17.41■□□□□ 0.38
SMAD9-202ENST00000379826 DCAF1Q9Y4B6 1507 aa17.38■□□□□ 0.37
SMAD9-202ENST00000379826 CENPBP07199 599 aaPredicted RBP17.36■□□□□ 0.37
SMAD9-202ENST00000379826 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
SMAD9-202ENST00000379826 YTHDC1Q96MU7 727 aaKnown RBP17.35■□□□□ 0.37
SMAD9-202ENST00000379826 ABCC9O60706 1549 aa17.34■□□□□ 0.37
SMAD9-202ENST00000379826 RANGAP1P46060 587 aaPredicted RBP17.33■□□□□ 0.36
SMAD9-202ENST00000379826 CCDC180Q9P1Z9 1646 aa17.33■□□□□ 0.36
SMAD9-202ENST00000379826 UBTFP17480 764 aaKnown RBP17.25■□□□□ 0.35
SMAD9-202ENST00000379826 APLP2Q06481 763 aa17.23■□□□□ 0.35
SMAD9-202ENST00000379826 SCRIBQ14160 1630 aa17.13■□□□□ 0.33
SMAD9-202ENST00000379826 DIEXFQ68CQ4 756 aaKnown RBP17.11■□□□□ 0.33
SMAD9-202ENST00000379826 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
SMAD9-202ENST00000379826 SCAF1Q9H7N4 1312 aaKnown RBP17.05■□□□□ 0.32
SMAD9-202ENST00000379826 GTF3C3Q9Y5Q9 886 aa17.02■□□□□ 0.32
SMAD9-202ENST00000379826 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.31
SMAD9-202ENST00000379826 ACIN1Q9UKV3 1341 aaKnown RBP16.94■□□□□ 0.3
SMAD9-202ENST00000379826 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
SMAD9-202ENST00000379826 NEUROD1Q13562 356 aa16.86■□□□□ 0.29
SMAD9-202ENST00000379826 MYT1LQ9UL68 1186 aa16.8■□□□□ 0.28
SMAD9-202ENST00000379826 ZNF316A6NFI3 1004 aaPredicted RBP16.75■□□□□ 0.27
SMAD9-202ENST00000379826 ITGAEP38570 1179 aa16.75■□□□□ 0.27
SMAD9-202ENST00000379826 MYT1Q01538 1121 aa16.74■□□□□ 0.27
SMAD9-202ENST00000379826 ATP1B4Q9UN42 357 aaPredicted RBP16.74■□□□□ 0.27
SMAD9-202ENST00000379826 RB1CC1Q8TDY2 1594 aa16.73■□□□□ 0.27
SMAD9-202ENST00000379826 CSRNP3Q8WYN3 585 aa16.61■□□□□ 0.25
SMAD9-202ENST00000379826 FBLN2P98095 1184 aa16.58■□□□□ 0.25
SMAD9-202ENST00000379826 CECR2Q9BXF3 1484 aa16.57■□□□□ 0.24
SMAD9-202ENST00000379826 MIER1Q8N108 512 aa16.51■□□□□ 0.23
SMAD9-202ENST00000379826 CEP162Q5TB80 1403 aa16.5■□□□□ 0.23
SMAD9-202ENST00000379826 NEFLP07196 543 aa16.48■□□□□ 0.23
SMAD9-202ENST00000379826 BCANQ96GW7 911 aa16.47■□□□□ 0.23
SMAD9-202ENST00000379826 MROH2BQ7Z745 1585 aa16.45■□□□□ 0.22
SMAD9-202ENST00000379826 ERICH6Q7L0X2 663 aa16.41■□□□□ 0.22
SMAD9-202ENST00000379826 ABCC8Q09428 1581 aa16.39■□□□□ 0.21
SMAD9-202ENST00000379826 WIZO95785 1651 aa16.39■□□□□ 0.21
SMAD9-202ENST00000379826 SOGA1O94964 1423 aa16.36■□□□□ 0.21
SMAD9-202ENST00000379826 FAM50AQ14320 339 aaKnown RBP16.34■□□□□ 0.21
SMAD9-202ENST00000379826 CCDC88BA6NC98 1476 aa16.31■□□□□ 0.2
SMAD9-202ENST00000379826 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
SMAD9-202ENST00000379826 NACADO15069 1562 aa16.3■□□□□ 0.2
SMAD9-202ENST00000379826 GOLGA3Q08378 1498 aa16.28■□□□□ 0.2
SMAD9-202ENST00000379826 CLIP1P30622 1438 aa16.27■□□□□ 0.2
SMAD9-202ENST00000379826 BAZ1AQ9NRL2 1556 aaPredicted RBP16.21■□□□□ 0.19
SMAD9-202ENST00000379826 CNGB1Q14028 1251 aaPredicted RBP16.19■□□□□ 0.18
SMAD9-202ENST00000379826 TRHP20396 242 aaPredicted RBP16.19■□□□□ 0.18
SMAD9-202ENST00000379826 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
SMAD9-202ENST00000379826 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
SMAD9-202ENST00000379826 P3H3Q8IVL6 736 aa16.17■□□□□ 0.18
SMAD9-202ENST00000379826 EEA1Q15075 1411 aa16.16■□□□□ 0.18
SMAD9-202ENST00000379826 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SMAD9-202ENST00000379826 RUSC2Q8N2Y8 1516 aa16.12■□□□□ 0.17
SMAD9-202ENST00000379826 PLPPR3Q6T4P5 718 aa16.12■□□□□ 0.17
SMAD9-202ENST00000379826 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
SMAD9-202ENST00000379826 AEBP2Q6ZN18 517 aaPredicted RBP16.11■□□□□ 0.17
SMAD9-202ENST00000379826 ANP32CO43423 234 aa16.1■□□□□ 0.17
SMAD9-202ENST00000379826 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
SMAD9-202ENST00000379826 POLR3GLQ9BT43 218 aa16.1■□□□□ 0.17
SMAD9-202ENST00000379826 HIRIP3Q9BW71 556 aaPredicted RBP16.08■□□□□ 0.17
SMAD9-202ENST00000379826 TOP2AP11388 1531 aaKnown RBP16.06■□□□□ 0.16
SMAD9-202ENST00000379826 SUPT16HQ9Y5B9 1047 aaKnown RBP16.04■□□□□ 0.16
SMAD9-202ENST00000379826 TRIM52Q96A61 297 aa16.02■□□□□ 0.16
SMAD9-202ENST00000379826 ESF1Q9H501 851 aaKnown RBP16.01■□□□□ 0.15
SMAD9-202ENST00000379826 ERCC6Q03468 1493 aa16.01■□□□□ 0.15
SMAD9-202ENST00000379826 CLSPNQ9HAW4 1339 aa16■□□□□ 0.15
SMAD9-202ENST00000379826 VPS8Q8N3P4 1428 aa15.96■□□□□ 0.14
SMAD9-202ENST00000379826 KANK4Q5T7N3 995 aaPredicted RBP15.95■□□□□ 0.14
SMAD9-202ENST00000379826 BAZ1BQ9UIG0 1483 aaKnown RBP15.92■□□□□ 0.14
SMAD9-202ENST00000379826 SMARCA4P51532 1647 aa15.92■□□□□ 0.14
SMAD9-202ENST00000379826 CDK11AQ9UQ88 783 aaPredicted RBP15.91■□□□□ 0.14
SMAD9-202ENST00000379826 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
SMAD9-202ENST00000379826 IRX6P78412 446 aaPredicted RBP15.9■□□□□ 0.14
SMAD9-202ENST00000379826 SIN3AQ96ST3 1273 aa15.89■□□□□ 0.13
SMAD9-202ENST00000379826 ARID3CA6NKF2 412 aa15.88■□□□□ 0.13
SMAD9-202ENST00000379826 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
SMAD9-202ENST00000379826 HNRNPUQ00839 825 aaKnown RBP eCLIP15.86■□□□□ 0.13
SMAD9-202ENST00000379826 TONSLQ96HA7 1378 aa15.85■□□□□ 0.13
SMAD9-202ENST00000379826 KCNH8Q96L42 1107 aa15.83■□□□□ 0.12
SMAD9-202ENST00000379826 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
SMAD9-202ENST00000379826 ZNF326Q5BKZ1 582 aaKnown RBP15.81■□□□□ 0.12
SMAD9-202ENST00000379826 CCNB3Q8WWL7 1395 aa15.8■□□□□ 0.12
SMAD9-202ENST00000379826 DHX57Q6P158 1386 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms