RNA–Protein interactions for RNA: ENST00000378505.6

RPGR-203, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene RPGR, Length 4,767 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-203ENST00000378505 DCAF8L2P0C7V8 631 aa19.55■□□□□ 0.72
RPGR-203ENST00000378505 NISCHQ9Y2I1 1504 aa19.54■□□□□ 0.72
RPGR-203ENST00000378505 SUPT5HO00267 1087 aaKnown RBP18.84■□□□□ 0.61
RPGR-203ENST00000378505 SHROOM4Q9ULL8 1493 aa18.55■□□□□ 0.56
RPGR-203ENST00000378505 EHMT2Q96KQ7 1210 aa17.94■□□□□ 0.46
RPGR-203ENST00000378505 FAM9AQ8IZU1 332 aaPredicted RBP17.69■□□□□ 0.42
RPGR-203ENST00000378505 PCGF6Q9BYE7 350 aa17.66■□□□□ 0.42
RPGR-203ENST00000378505 APLP2Q06481 763 aa17.65■□□□□ 0.42
RPGR-203ENST00000378505 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
RPGR-203ENST00000378505 PELP1Q8IZL8 1130 aaKnown RBP17.44■□□□□ 0.38
RPGR-203ENST00000378505 ZEB1P37275 1124 aaPredicted RBP17.38■□□□□ 0.37
RPGR-203ENST00000378505 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
RPGR-203ENST00000378505 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
RPGR-203ENST00000378505 UBTFP17480 764 aaKnown RBP17.17■□□□□ 0.34
RPGR-203ENST00000378505 RANGAP1P46060 587 aaPredicted RBP17.16■□□□□ 0.34
RPGR-203ENST00000378505 CENPBP07199 599 aaPredicted RBP17.14■□□□□ 0.33
RPGR-203ENST00000378505 CHIC1Q5VXU3 224 aa17.07■□□□□ 0.32
RPGR-203ENST00000378505 TRIM26Q12899 539 aaPredicted RBP17.04■□□□□ 0.32
RPGR-203ENST00000378505 ATP1B4Q9UN42 357 aaPredicted RBP16.95■□□□□ 0.3
RPGR-203ENST00000378505 HRCP23327 699 aa16.95■□□□□ 0.3
RPGR-203ENST00000378505 LOC105371045A0A1W2PR82 267 aa16.92■□□□□ 0.3
RPGR-203ENST00000378505 PPARGC1BQ86YN6 1023 aaKnown RBP16.91■□□□□ 0.3
RPGR-203ENST00000378505 YTHDC1Q96MU7 727 aaKnown RBP16.7■□□□□ 0.26
RPGR-203ENST00000378505 NEFLP07196 543 aa16.64■□□□□ 0.25
RPGR-203ENST00000378505 ERICH6Q7L0X2 663 aa16.61■□□□□ 0.25
RPGR-203ENST00000378505 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
RPGR-203ENST00000378505 ITGAEP38570 1179 aa16.54■□□□□ 0.24
RPGR-203ENST00000378505 ABCC9O60706 1549 aa16.47■□□□□ 0.23
RPGR-203ENST00000378505 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
RPGR-203ENST00000378505 MYT1Q01538 1121 aa16.39■□□□□ 0.21
RPGR-203ENST00000378505 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
RPGR-203ENST00000378505 DIEXFQ68CQ4 756 aaKnown RBP16.34■□□□□ 0.21
RPGR-203ENST00000378505 ZCCHC6Q5VYS8 1495 aaKnown RBP16.23■□□□□ 0.19
RPGR-203ENST00000378505 POLR3GLQ9BT43 218 aa16.21■□□□□ 0.19
RPGR-203ENST00000378505 FAM50AQ14320 339 aaKnown RBP16.18■□□□□ 0.18
RPGR-203ENST00000378505 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
RPGR-203ENST00000378505 MYT1LQ9UL68 1186 aa16.13■□□□□ 0.17
RPGR-203ENST00000378505 CNGB1Q14028 1251 aaPredicted RBP16.05■□□□□ 0.16
RPGR-203ENST00000378505 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
RPGR-203ENST00000378505 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
RPGR-203ENST00000378505 TRIM52Q96A61 297 aa16.02■□□□□ 0.15
RPGR-203ENST00000378505 DCAF1Q9Y4B6 1507 aa16■□□□□ 0.15
RPGR-203ENST00000378505 DAXXQ9UER7 740 aaPredicted RBP15.98■□□□□ 0.15
RPGR-203ENST00000378505 GTF3C3Q9Y5Q9 886 aa15.97■□□□□ 0.15
RPGR-203ENST00000378505 SCRIBQ14160 1630 aa15.96■□□□□ 0.15
RPGR-203ENST00000378505 CCDC180Q9P1Z9 1646 aa15.95■□□□□ 0.14
RPGR-203ENST00000378505 ANP32CO43423 234 aa15.91■□□□□ 0.14
RPGR-203ENST00000378505 ACIN1Q9UKV3 1341 aaKnown RBP15.85■□□□□ 0.13
RPGR-203ENST00000378505 P3H3Q8IVL6 736 aa15.85■□□□□ 0.13
RPGR-203ENST00000378505 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
RPGR-203ENST00000378505 ZNF326Q5BKZ1 582 aaKnown RBP15.78■□□□□ 0.12
RPGR-203ENST00000378505 BCANQ96GW7 911 aa15.77■□□□□ 0.12
RPGR-203ENST00000378505 FBLN2P98095 1184 aa15.76■□□□□ 0.11
RPGR-203ENST00000378505 RSF1Q96T23 1441 aaPredicted RBP15.71■□□□□ 0.11
RPGR-203ENST00000378505 RTL5Q5HYW3 569 aaPredicted RBP15.71■□□□□ 0.1
RPGR-203ENST00000378505 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
RPGR-203ENST00000378505 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
RPGR-203ENST00000378505 CDK11AQ9UQ88 783 aaPredicted RBP15.68■□□□□ 0.1
RPGR-203ENST00000378505 ARID3CA6NKF2 412 aa15.67■□□□□ 0.1
RPGR-203ENST00000378505 TONSLQ96HA7 1378 aa15.61■□□□□ 0.09
RPGR-203ENST00000378505 EEA1Q15075 1411 aa15.59■□□□□ 0.09
RPGR-203ENST00000378505 ZNF777Q9ULD5 760 aaPredicted RBP15.59■□□□□ 0.09
RPGR-203ENST00000378505 CLIP1P30622 1438 aa15.59■□□□□ 0.09
RPGR-203ENST00000378505 DDX10Q13206 875 aaKnown RBP15.54■□□□□ 0.08
RPGR-203ENST00000378505 RB1CC1Q8TDY2 1594 aa15.54■□□□□ 0.08
RPGR-203ENST00000378505 CEP162Q5TB80 1403 aa15.51■□□□□ 0.07
RPGR-203ENST00000378505 NACADO15069 1562 aa15.5■□□□□ 0.07
RPGR-203ENST00000378505 GOLGA3Q08378 1498 aa15.49■□□□□ 0.07
RPGR-203ENST00000378505 FKBP8Q14318 412 aa15.47■□□□□ 0.07
RPGR-203ENST00000378505 WRNQ14191 1432 aaPredicted RBP eCLIP15.46■□□□□ 0.07
RPGR-203ENST00000378505 HNRNPUQ00839 825 aaKnown RBP eCLIP15.45■□□□□ 0.06
RPGR-203ENST00000378505 MTUS2Q5JR59 1369 aa15.45■□□□□ 0.06
RPGR-203ENST00000378505 TNIKQ9UKE5 1360 aa15.45■□□□□ 0.06
RPGR-203ENST00000378505 CHIC2Q9UKJ5 165 aa15.44■□□□□ 0.06
RPGR-203ENST00000378505 MIER1Q8N108 512 aa15.43■□□□□ 0.06
RPGR-203ENST00000378505 CANXP27824 592 aaKnown RBP15.41■□□□□ 0.06
RPGR-203ENST00000378505 ANP32AP39687 249 aaKnown RBP15.38■□□□□ 0.05
RPGR-203ENST00000378505 ZBTB47Q9UFB7 747 aaPredicted RBP15.38■□□□□ 0.05
RPGR-203ENST00000378505 FAM9BQ8IZU0 186 aa15.37■□□□□ 0.05
RPGR-203ENST00000378505 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
RPGR-203ENST00000378505 NEFMP07197 916 aa15.36■□□□□ 0.05
RPGR-203ENST00000378505 CEP164Q9UPV0 1460 aa15.35■□□□□ 0.05
RPGR-203ENST00000378505 TSPY4P0CV99 314 aa15.34■□□□□ 0.05
RPGR-203ENST00000378505 TSPY10P0CW01 314 aa15.34■□□□□ 0.05
RPGR-203ENST00000378505 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
RPGR-203ENST00000378505 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
RPGR-203ENST00000378505 CECR2Q9BXF3 1484 aa15.32■□□□□ 0.04
RPGR-203ENST00000378505 KIF27Q86VH2 1401 aa15.32■□□□□ 0.04
RPGR-203ENST00000378505 TMC1Q8TDI8 760 aa15.3■□□□□ 0.04
RPGR-203ENST00000378505 MRS2Q9HD23 443 aa15.29■□□□□ 0.04
RPGR-203ENST00000378505 EIF4G2P78344 907 aaKnown RBP eCLIP15.28■□□□□ 0.04
RPGR-203ENST00000378505 HIRIP3Q9BW71 556 aaPredicted RBP15.27■□□□□ 0.04
RPGR-203ENST00000378505 RRP7BPQ9NSQ0 103 aa15.26■□□□□ 0.03
RPGR-203ENST00000378505 CHMP7Q8WUX9 453 aaPredicted RBP15.26■□□□□ 0.03
RPGR-203ENST00000378505 CHGAP10645 457 aaKnown RBP15.25■□□□□ 0.03
RPGR-203ENST00000378505 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.24■□□□□ 0.03
RPGR-203ENST00000378505 NPM2Q86SE8 214 aaKnown RBP15.24■□□□□ 0.03
RPGR-203ENST00000378505 KDM2AQ9Y2K7 1162 aa15.22■□□□□ 0.03
RPGR-203ENST00000378505 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
RPGR-203ENST00000378505 CCDC136Q96JN2 1154 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms