RNA–Protein interactions for RNA: ENST00000370852.6

HMGCLL1-204, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 2

Gene HMGCLL1, Length 2,445 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-204ENST00000370852 NISCHQ9Y2I1 1504 aa16.96■□□□□ 0.31
HMGCLL1-204ENST00000370852 HRCP23327 699 aa16.2■□□□□ 0.18
HMGCLL1-204ENST00000370852 PPARGC1BQ86YN6 1023 aaKnown RBP16.13■□□□□ 0.17
HMGCLL1-204ENST00000370852 PCGF6Q9BYE7 350 aa15.86■□□□□ 0.13
HMGCLL1-204ENST00000370852 PELP1Q8IZL8 1130 aaKnown RBP15.76■□□□□ 0.11
HMGCLL1-204ENST00000370852 MYO15BQ96JP2 1530 aa15.65■□□□□ 0.1
HMGCLL1-204ENST00000370852 SUPT5HO00267 1087 aaKnown RBP15.63■□□□□ 0.09
HMGCLL1-204ENST00000370852 SHROOM4Q9ULL8 1493 aa15.62■□□□□ 0.09
HMGCLL1-204ENST00000370852 SCAF1Q9H7N4 1312 aaKnown RBP15.61■□□□□ 0.09
HMGCLL1-204ENST00000370852 CHIC1Q5VXU3 224 aa15.36■□□□□ 0.05
HMGCLL1-204ENST00000370852 LOC105371045A0A1W2PR82 267 aa15.22■□□□□ 0.03
HMGCLL1-204ENST00000370852 MYT1Q01538 1121 aa15.11■□□□□ 0.01
HMGCLL1-204ENST00000370852 TRIM26Q12899 539 aaPredicted RBP15.09■□□□□ 0.01
HMGCLL1-204ENST00000370852 DCAF1Q9Y4B6 1507 aa15.09■□□□□ 0.01
HMGCLL1-204ENST00000370852 NEUROD1Q13562 356 aa15.08■□□□□ 0
HMGCLL1-204ENST00000370852 ACIN1Q9UKV3 1341 aaKnown RBP15.02□□□□□ -0.01
HMGCLL1-204ENST00000370852 GTF3C3Q9Y5Q9 886 aa14.99□□□□□ -0.01
HMGCLL1-204ENST00000370852 CCDC180Q9P1Z9 1646 aa14.96□□□□□ -0.01
HMGCLL1-204ENST00000370852 ZEB1P37275 1124 aaPredicted RBP14.9□□□□□ -0.02
HMGCLL1-204ENST00000370852 CENPBP07199 599 aaPredicted RBP14.64□□□□□ -0.07
HMGCLL1-204ENST00000370852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
HMGCLL1-204ENST00000370852 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
HMGCLL1-204ENST00000370852 DIEXFQ68CQ4 756 aaKnown RBP14.62□□□□□ -0.07
HMGCLL1-204ENST00000370852 YTHDC1Q96MU7 727 aaKnown RBP14.58□□□□□ -0.07
HMGCLL1-204ENST00000370852 BCL11AQ9H165 835 aa14.52□□□□□ -0.08
HMGCLL1-204ENST00000370852 FAM9AQ8IZU1 332 aaPredicted RBP14.52□□□□□ -0.09
HMGCLL1-204ENST00000370852 CCER1Q8TC90 406 aaPredicted RBP14.49□□□□□ -0.09
HMGCLL1-204ENST00000370852 ZCCHC6Q5VYS8 1495 aaKnown RBP14.46□□□□□ -0.1
HMGCLL1-204ENST00000370852 DCAF8L2P0C7V8 631 aa14.43□□□□□ -0.1
HMGCLL1-204ENST00000370852 TRIM41Q8WV44 630 aa14.34□□□□□ -0.11
HMGCLL1-204ENST00000370852 MIER1Q8N108 512 aa14.31□□□□□ -0.12
HMGCLL1-204ENST00000370852 TTBK1Q5TCY1 1321 aaPredicted RBP14.3□□□□□ -0.12
HMGCLL1-204ENST00000370852 CSRNP3Q8WYN3 585 aa14.27□□□□□ -0.13
HMGCLL1-204ENST00000370852 ANP32EQ9BTT0 268 aa14.27□□□□□ -0.13
HMGCLL1-204ENST00000370852 ZNF316A6NFI3 1004 aaPredicted RBP14.22□□□□□ -0.13
HMGCLL1-204ENST00000370852 TSHZ2Q9NRE2 1034 aa14.2□□□□□ -0.14
HMGCLL1-204ENST00000370852 SUPT16HQ9Y5B9 1047 aaKnown RBP14.16□□□□□ -0.14
HMGCLL1-204ENST00000370852 PRKCSHP14314 528 aaPredicted RBP14.14□□□□□ -0.15
HMGCLL1-204ENST00000370852 BCANQ96GW7 911 aa13.96□□□□□ -0.17
HMGCLL1-204ENST00000370852 RB1CC1Q8TDY2 1594 aa13.9□□□□□ -0.18
HMGCLL1-204ENST00000370852 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
HMGCLL1-204ENST00000370852 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
HMGCLL1-204ENST00000370852 KCNH8Q96L42 1107 aa13.83□□□□□ -0.2
HMGCLL1-204ENST00000370852 MSH5O43196 834 aa13.82□□□□□ -0.2
HMGCLL1-204ENST00000370852 RBM19Q9Y4C8 960 aaKnown RBP13.81□□□□□ -0.2
HMGCLL1-204ENST00000370852 ABCC9O60706 1549 aa13.79□□□□□ -0.2
HMGCLL1-204ENST00000370852 ITGAEP38570 1179 aa13.76□□□□□ -0.21
HMGCLL1-204ENST00000370852 FKBP8Q14318 412 aa13.75□□□□□ -0.21
HMGCLL1-204ENST00000370852 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
HMGCLL1-204ENST00000370852 ANO8Q9HCE9 1232 aaPredicted RBP13.7□□□□□ -0.22
HMGCLL1-204ENST00000370852 WRNQ14191 1432 aaPredicted RBP eCLIP13.68□□□□□ -0.22
HMGCLL1-204ENST00000370852 CEP162Q5TB80 1403 aa13.68□□□□□ -0.22
HMGCLL1-204ENST00000370852 DEKP35659 375 aaKnown RBP13.55□□□□□ -0.24
HMGCLL1-204ENST00000370852 UBTFP17480 764 aaKnown RBP13.53□□□□□ -0.24
HMGCLL1-204ENST00000370852 ABCC8Q09428 1581 aa13.53□□□□□ -0.24
HMGCLL1-204ENST00000370852 SALL2Q9Y467 1007 aaPredicted RBP13.53□□□□□ -0.24
HMGCLL1-204ENST00000370852 SCRIBQ14160 1630 aa13.52□□□□□ -0.25
HMGCLL1-204ENST00000370852 CCDC136Q96JN2 1154 aa13.52□□□□□ -0.25
HMGCLL1-204ENST00000370852 SOGA1O94964 1423 aa13.51□□□□□ -0.25
HMGCLL1-204ENST00000370852 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
HMGCLL1-204ENST00000370852 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
HMGCLL1-204ENST00000370852 ERICH6Q7L0X2 663 aa13.49□□□□□ -0.25
HMGCLL1-204ENST00000370852 RUSC2Q8N2Y8 1516 aa13.47□□□□□ -0.25
HMGCLL1-204ENST00000370852 TNIKQ9UKE5 1360 aa13.47□□□□□ -0.25
HMGCLL1-204ENST00000370852 IRX6P78412 446 aaPredicted RBP13.47□□□□□ -0.25
HMGCLL1-204ENST00000370852 CECR2Q9BXF3 1484 aa13.46□□□□□ -0.26
HMGCLL1-204ENST00000370852 DHX57Q6P158 1386 aaKnown RBP13.45□□□□□ -0.26
HMGCLL1-204ENST00000370852 APLP2Q06481 763 aa13.44□□□□□ -0.26
HMGCLL1-204ENST00000370852 NEFLP07196 543 aa13.43□□□□□ -0.26
HMGCLL1-204ENST00000370852 FANCIQ9NVI1 1328 aa13.42□□□□□ -0.26
HMGCLL1-204ENST00000370852 RANGAP1P46060 587 aaPredicted RBP13.41□□□□□ -0.26
HMGCLL1-204ENST00000370852 NBR1Q14596 966 aa13.41□□□□□ -0.26
HMGCLL1-204ENST00000370852 DDX10Q13206 875 aaKnown RBP13.41□□□□□ -0.26
HMGCLL1-204ENST00000370852 WIZO95785 1651 aa13.4□□□□□ -0.26
HMGCLL1-204ENST00000370852 MROH2BQ7Z745 1585 aa13.4□□□□□ -0.26
HMGCLL1-204ENST00000370852 RTN4Q9NQC3 1192 aaKnown RBP13.38□□□□□ -0.27
HMGCLL1-204ENST00000370852 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.37□□□□□ -0.27
HMGCLL1-204ENST00000370852 HIRIP3Q9BW71 556 aaPredicted RBP13.37□□□□□ -0.27
HMGCLL1-204ENST00000370852 EIF4G1Q04637 1599 aaKnown RBP13.36□□□□□ -0.27
HMGCLL1-204ENST00000370852 IL27Q8NEV9 243 aa13.35□□□□□ -0.27
HMGCLL1-204ENST00000370852 PAK3O75914 559 aaPredicted RBP13.33□□□□□ -0.27
HMGCLL1-204ENST00000370852 CDK11AQ9UQ88 783 aaPredicted RBP13.32□□□□□ -0.28
HMGCLL1-204ENST00000370852 CLIP1P30622 1438 aa13.27□□□□□ -0.29
HMGCLL1-204ENST00000370852 NACADO15069 1562 aa13.25□□□□□ -0.29
HMGCLL1-204ENST00000370852 GOLGA3Q08378 1498 aa13.24□□□□□ -0.29
HMGCLL1-204ENST00000370852 PPP1R15AO75807 674 aaPredicted RBP13.23□□□□□ -0.29
HMGCLL1-204ENST00000370852 NOP58Q9Y2X3 529 aaKnown RBP13.21□□□□□ -0.3
HMGCLL1-204ENST00000370852 KANK4Q5T7N3 995 aaPredicted RBP13.2□□□□□ -0.3
HMGCLL1-204ENST00000370852 MYT1LQ9UL68 1186 aa13.2□□□□□ -0.3
HMGCLL1-204ENST00000370852 VPS8Q8N3P4 1428 aa13.2□□□□□ -0.3
HMGCLL1-204ENST00000370852 B4GALNT3Q6L9W6 998 aa13.19□□□□□ -0.3
HMGCLL1-204ENST00000370852 SIN3AQ96ST3 1273 aa13.19□□□□□ -0.3
HMGCLL1-204ENST00000370852 WDR97A6NE52 1622 aa13.17□□□□□ -0.3
HMGCLL1-204ENST00000370852 UBE2Q2Q8WVN8 375 aa13.16□□□□□ -0.3
HMGCLL1-204ENST00000370852 HNRNPUQ00839 825 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGCLL1-204ENST00000370852 ANP32CO43423 234 aa13.13□□□□□ -0.31
HMGCLL1-204ENST00000370852 ERICH6BQ5W0A0 696 aa13.13□□□□□ -0.31
HMGCLL1-204ENST00000370852 BAZ1AQ9NRL2 1556 aaPredicted RBP13.13□□□□□ -0.31
HMGCLL1-204ENST00000370852 CCER2I3L3R5 266 aa13.11□□□□□ -0.31
HMGCLL1-204ENST00000370852 MAPKBP1O60336 1514 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms