RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
SYNE1-204ENST00000367248 NISCHQ9Y2I1 1504 aa20.41■□□□□ 0.86
SYNE1-204ENST00000367248 SUPT5HO00267 1087 aaKnown RBP19.49■□□□□ 0.71
SYNE1-204ENST00000367248 SHROOM4Q9ULL8 1493 aa19.33■□□□□ 0.69
SYNE1-204ENST00000367248 EHMT2Q96KQ7 1210 aa19.29■□□□□ 0.68
SYNE1-204ENST00000367248 RANGAP1P46060 587 aaPredicted RBP18.53■□□□□ 0.56
SYNE1-204ENST00000367248 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-204ENST00000367248 TTBK1Q5TCY1 1321 aaPredicted RBP18.46■□□□□ 0.55
SYNE1-204ENST00000367248 APLP2Q06481 763 aa18.37■□□□□ 0.53
SYNE1-204ENST00000367248 ATP1B4Q9UN42 357 aaPredicted RBP18.31■□□□□ 0.52
SYNE1-204ENST00000367248 TRIM41Q8WV44 630 aa18.11■□□□□ 0.49
SYNE1-204ENST00000367248 UBTFP17480 764 aaKnown RBP17.85■□□□□ 0.45
SYNE1-204ENST00000367248 MYT1LQ9UL68 1186 aa17.83■□□□□ 0.44
SYNE1-204ENST00000367248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-204ENST00000367248 HNRNPUL2Q1KMD3 747 aaKnown RBP17.73■□□□□ 0.43
SYNE1-204ENST00000367248 PCGF6Q9BYE7 350 aa17.73■□□□□ 0.43
SYNE1-204ENST00000367248 ABCC9O60706 1549 aa17.72■□□□□ 0.43
SYNE1-204ENST00000367248 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
SYNE1-204ENST00000367248 CHIC1Q5VXU3 224 aa17.67■□□□□ 0.42
SYNE1-204ENST00000367248 PPARGC1BQ86YN6 1023 aaKnown RBP17.59■□□□□ 0.41
SYNE1-204ENST00000367248 CCER1Q8TC90 406 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-204ENST00000367248 ITGAEP38570 1179 aa17.43■□□□□ 0.38
SYNE1-204ENST00000367248 ZEB1P37275 1124 aaPredicted RBP17.4■□□□□ 0.38
SYNE1-204ENST00000367248 PELP1Q8IZL8 1130 aaKnown RBP17.39■□□□□ 0.37
SYNE1-204ENST00000367248 FBLN2P98095 1184 aa17.33■□□□□ 0.36
SYNE1-204ENST00000367248 POLR3GLQ9BT43 218 aa17.27■□□□□ 0.35
SYNE1-204ENST00000367248 LOC105371045A0A1W2PR82 267 aa17.23■□□□□ 0.35
SYNE1-204ENST00000367248 CNGB1Q14028 1251 aaPredicted RBP17.22■□□□□ 0.35
SYNE1-204ENST00000367248 TRIM26Q12899 539 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-204ENST00000367248 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
SYNE1-204ENST00000367248 CENPBP07199 599 aaPredicted RBP17.05■□□□□ 0.32
SYNE1-204ENST00000367248 ARID3CA6NKF2 412 aa17.01■□□□□ 0.31
SYNE1-204ENST00000367248 PLPPR3Q6T4P5 718 aa16.98■□□□□ 0.31
SYNE1-204ENST00000367248 YTHDC1Q96MU7 727 aaKnown RBP16.97■□□□□ 0.31
SYNE1-204ENST00000367248 ZCCHC6Q5VYS8 1495 aaKnown RBP16.89■□□□□ 0.29
SYNE1-204ENST00000367248 FAM50AQ14320 339 aaKnown RBP16.87■□□□□ 0.29
SYNE1-204ENST00000367248 SCRIBQ14160 1630 aa16.87■□□□□ 0.29
SYNE1-204ENST00000367248 BCANQ96GW7 911 aa16.83■□□□□ 0.29
SYNE1-204ENST00000367248 P3H3Q8IVL6 736 aa16.81■□□□□ 0.28
SYNE1-204ENST00000367248 TRIM52Q96A61 297 aa16.79■□□□□ 0.28
SYNE1-204ENST00000367248 CSRNP3Q8WYN3 585 aa16.78■□□□□ 0.28
SYNE1-204ENST00000367248 NEFLP07196 543 aa16.76■□□□□ 0.27
SYNE1-204ENST00000367248 HRCP23327 699 aa16.73■□□□□ 0.27
SYNE1-204ENST00000367248 ERICH6Q7L0X2 663 aa16.72■□□□□ 0.27
SYNE1-204ENST00000367248 ZNF326Q5BKZ1 582 aaKnown RBP16.69■□□□□ 0.26
SYNE1-204ENST00000367248 ZNF777Q9ULD5 760 aaPredicted RBP16.65■□□□□ 0.26
SYNE1-204ENST00000367248 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
SYNE1-204ENST00000367248 SLC24A1O60721 1099 aa16.61■□□□□ 0.25
SYNE1-204ENST00000367248 NEUROD1Q13562 356 aa16.6■□□□□ 0.25
SYNE1-204ENST00000367248 ESF1Q9H501 851 aaKnown RBP16.6■□□□□ 0.25
SYNE1-204ENST00000367248 NPM1P06748 294 aaKnown RBP eCLIP16.55■□□□□ 0.24
SYNE1-204ENST00000367248 CDK11AQ9UQ88 783 aaPredicted RBP16.5■□□□□ 0.23
SYNE1-204ENST00000367248 RB1CC1Q8TDY2 1594 aa16.5■□□□□ 0.23
SYNE1-204ENST00000367248 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.23
SYNE1-204ENST00000367248 BCL11AQ9H165 835 aa16.44■□□□□ 0.22
SYNE1-204ENST00000367248 STAG3Q9UJ98 1225 aa16.44■□□□□ 0.22
SYNE1-204ENST00000367248 SENP3Q9H4L4 574 aaPredicted RBP16.43■□□□□ 0.22
SYNE1-204ENST00000367248 NACADO15069 1562 aa16.36■□□□□ 0.21
SYNE1-204ENST00000367248 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-204ENST00000367248 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
SYNE1-204ENST00000367248 CHMP7Q8WUX9 453 aaPredicted RBP16.33■□□□□ 0.2
SYNE1-204ENST00000367248 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
SYNE1-204ENST00000367248 SCAF1Q9H7N4 1312 aaKnown RBP16.29■□□□□ 0.2
SYNE1-204ENST00000367248 DAXXQ9UER7 740 aaPredicted RBP16.28■□□□□ 0.2
SYNE1-204ENST00000367248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.27■□□□□ 0.2
SYNE1-204ENST00000367248 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
SYNE1-204ENST00000367248 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
SYNE1-204ENST00000367248 A0A0G2JS52 829 aa16.22■□□□□ 0.19
SYNE1-204ENST00000367248 TRHP20396 242 aaPredicted RBP16.22■□□□□ 0.19
SYNE1-204ENST00000367248 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
SYNE1-204ENST00000367248 ARID4BQ4LE39 1312 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-204ENST00000367248 CHIC2Q9UKJ5 165 aa16.16■□□□□ 0.18
SYNE1-204ENST00000367248 ANP32CO43423 234 aa16.15■□□□□ 0.18
SYNE1-204ENST00000367248 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
SYNE1-204ENST00000367248 WRNQ14191 1432 aaPredicted RBP eCLIP16.14■□□□□ 0.18
SYNE1-204ENST00000367248 EEA1Q15075 1411 aa16.11■□□□□ 0.17
SYNE1-204ENST00000367248 MTUS2Q5JR59 1369 aa16.11■□□□□ 0.17
SYNE1-204ENST00000367248 CLIP1P30622 1438 aa16.11■□□□□ 0.17
SYNE1-204ENST00000367248 ZNF316A6NFI3 1004 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-204ENST00000367248 NEFMP07197 916 aa16.11■□□□□ 0.17
SYNE1-204ENST00000367248 TSPY4P0CV99 314 aa16.1■□□□□ 0.17
SYNE1-204ENST00000367248 TSPY10P0CW01 314 aa16.1■□□□□ 0.17
SYNE1-204ENST00000367248 ZBTB7CA1YPR0 619 aa16.09■□□□□ 0.17
SYNE1-204ENST00000367248 CECR2Q9BXF3 1484 aa16.07■□□□□ 0.16
SYNE1-204ENST00000367248 C14orf37Q86TY3 774 aa16.06■□□□□ 0.16
SYNE1-204ENST00000367248 ERCC6Q03468 1493 aa16.06■□□□□ 0.16
SYNE1-204ENST00000367248 BAZ1AQ9NRL2 1556 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-204ENST00000367248 ZBTB47Q9UFB7 747 aaPredicted RBP16.04■□□□□ 0.16
SYNE1-204ENST00000367248 TONSLQ96HA7 1378 aa16.04■□□□□ 0.16
SYNE1-204ENST00000367248 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
SYNE1-204ENST00000367248 CANXP27824 592 aaKnown RBP16.02■□□□□ 0.15
SYNE1-204ENST00000367248 PLEKHD1A6NEE1 506 aa16.01■□□□□ 0.15
SYNE1-204ENST00000367248 GOLGA3Q08378 1498 aa15.98■□□□□ 0.15
SYNE1-204ENST00000367248 KDM2AQ9Y2K7 1162 aa15.97■□□□□ 0.15
SYNE1-204ENST00000367248 PPP1R15AO75807 674 aaPredicted RBP15.96■□□□□ 0.15
SYNE1-204ENST00000367248 CEP162Q5TB80 1403 aa15.92■□□□□ 0.14
SYNE1-204ENST00000367248 HAP1P54257 671 aaPredicted RBP15.9■□□□□ 0.14
SYNE1-204ENST00000367248 MLECQ14165 292 aa15.88■□□□□ 0.13
SYNE1-204ENST00000367248 TNIKQ9UKE5 1360 aa15.88■□□□□ 0.13
SYNE1-204ENST00000367248 MYT1Q01538 1121 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms