RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 NISCHQ9Y2I1 1504 aa23.41■■□□□ 1.34
PCDHB11-201ENST00000354757 DCAF8L2P0C7V8 631 aa22.86■■□□□ 1.25
PCDHB11-201ENST00000354757 SHROOM4Q9ULL8 1493 aa21.75■■□□□ 1.07
PCDHB11-201ENST00000354757 SUPT5HO00267 1087 aaKnown RBP21.59■■□□□ 1.05
PCDHB11-201ENST00000354757 EHMT2Q96KQ7 1210 aa20.71■□□□□ 0.91
PCDHB11-201ENST00000354757 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
PCDHB11-201ENST00000354757 ABCC9O60706 1549 aa20.22■□□□□ 0.83
PCDHB11-201ENST00000354757 PABPN1Q86U42 306 aaKnown RBP eCLIP19.88■□□□□ 0.77
PCDHB11-201ENST00000354757 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
PCDHB11-201ENST00000354757 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
PCDHB11-201ENST00000354757 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.76
PCDHB11-201ENST00000354757 PCGF6Q9BYE7 350 aa19.55■□□□□ 0.72
PCDHB11-201ENST00000354757 CHIC1Q5VXU3 224 aa19.52■□□□□ 0.72
PCDHB11-201ENST00000354757 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
PCDHB11-201ENST00000354757 UBTFP17480 764 aaKnown RBP19.47■□□□□ 0.71
PCDHB11-201ENST00000354757 APLP2Q06481 763 aa19.46■□□□□ 0.71
PCDHB11-201ENST00000354757 PPARGC1BQ86YN6 1023 aaKnown RBP19.44■□□□□ 0.7
PCDHB11-201ENST00000354757 ZCCHC6Q5VYS8 1495 aaKnown RBP19.42■□□□□ 0.7
PCDHB11-201ENST00000354757 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.69
PCDHB11-201ENST00000354757 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
PCDHB11-201ENST00000354757 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
PCDHB11-201ENST00000354757 CCER1Q8TC90 406 aaPredicted RBP18.9■□□□□ 0.62
PCDHB11-201ENST00000354757 HRCP23327 699 aa18.88■□□□□ 0.61
PCDHB11-201ENST00000354757 ITGAEP38570 1179 aa18.82■□□□□ 0.6
PCDHB11-201ENST00000354757 RB1CC1Q8TDY2 1594 aa18.74■□□□□ 0.59
PCDHB11-201ENST00000354757 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.73■□□□□ 0.59
PCDHB11-201ENST00000354757 HNRNPUL2Q1KMD3 747 aaKnown RBP18.73■□□□□ 0.59
PCDHB11-201ENST00000354757 TRIM26Q12899 539 aaPredicted RBP18.73■□□□□ 0.59
PCDHB11-201ENST00000354757 RSF1Q96T23 1441 aaPredicted RBP18.67■□□□□ 0.58
PCDHB11-201ENST00000354757 NACADO15069 1562 aa18.64■□□□□ 0.57
PCDHB11-201ENST00000354757 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
PCDHB11-201ENST00000354757 FBLN2P98095 1184 aa18.58■□□□□ 0.57
PCDHB11-201ENST00000354757 PELP1Q8IZL8 1130 aaKnown RBP18.56■□□□□ 0.56
PCDHB11-201ENST00000354757 CSRNP3Q8WYN3 585 aa18.55■□□□□ 0.56
PCDHB11-201ENST00000354757 P3H3Q8IVL6 736 aa18.54■□□□□ 0.56
PCDHB11-201ENST00000354757 DCAF1Q9Y4B6 1507 aa18.47■□□□□ 0.55
PCDHB11-201ENST00000354757 ARID3CA6NKF2 412 aa18.46■□□□□ 0.55
PCDHB11-201ENST00000354757 ZEB1P37275 1124 aaPredicted RBP18.44■□□□□ 0.54
PCDHB11-201ENST00000354757 MYT1LQ9UL68 1186 aa18.36■□□□□ 0.53
PCDHB11-201ENST00000354757 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
PCDHB11-201ENST00000354757 FAM50AQ14320 339 aaKnown RBP18.34■□□□□ 0.53
PCDHB11-201ENST00000354757 MROH2BQ7Z745 1585 aa18.29■□□□□ 0.52
PCDHB11-201ENST00000354757 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
PCDHB11-201ENST00000354757 YTHDC1Q96MU7 727 aaKnown RBP18.22■□□□□ 0.51
PCDHB11-201ENST00000354757 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
PCDHB11-201ENST00000354757 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
PCDHB11-201ENST00000354757 WRNQ14191 1432 aaPredicted RBP eCLIP18.1■□□□□ 0.49
PCDHB11-201ENST00000354757 POLR3GLQ9BT43 218 aa18.09■□□□□ 0.49
PCDHB11-201ENST00000354757 NEUROD1Q13562 356 aa18.05■□□□□ 0.48
PCDHB11-201ENST00000354757 CENPBP07199 599 aaPredicted RBP18.05■□□□□ 0.48
PCDHB11-201ENST00000354757 TRIM52Q96A61 297 aa18.04■□□□□ 0.48
PCDHB11-201ENST00000354757 WIZO95785 1651 aa18.03■□□□□ 0.48
PCDHB11-201ENST00000354757 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
PCDHB11-201ENST00000354757 ZNF777Q9ULD5 760 aaPredicted RBP17.98■□□□□ 0.47
PCDHB11-201ENST00000354757 SOGA1O94964 1423 aa17.95■□□□□ 0.46
PCDHB11-201ENST00000354757 ABCC8Q09428 1581 aa17.95■□□□□ 0.46
PCDHB11-201ENST00000354757 MYT1Q01538 1121 aa17.94■□□□□ 0.46
PCDHB11-201ENST00000354757 CHMP7Q8WUX9 453 aaPredicted RBP17.91■□□□□ 0.46
PCDHB11-201ENST00000354757 CLIP1P30622 1438 aa17.89■□□□□ 0.45
PCDHB11-201ENST00000354757 ZNF326Q5BKZ1 582 aaKnown RBP17.85■□□□□ 0.45
PCDHB11-201ENST00000354757 CEP162Q5TB80 1403 aa17.84■□□□□ 0.45
PCDHB11-201ENST00000354757 CHIC2Q9UKJ5 165 aa17.81■□□□□ 0.44
PCDHB11-201ENST00000354757 ATAD2BQ9ULI0 1458 aa17.81■□□□□ 0.44
PCDHB11-201ENST00000354757 SCAF1Q9H7N4 1312 aaKnown RBP17.8■□□□□ 0.44
PCDHB11-201ENST00000354757 KIF27Q86VH2 1401 aa17.79■□□□□ 0.44
PCDHB11-201ENST00000354757 DIEXFQ68CQ4 756 aaKnown RBP17.78■□□□□ 0.44
PCDHB11-201ENST00000354757 GOLGA3Q08378 1498 aa17.76■□□□□ 0.43
PCDHB11-201ENST00000354757 SMARCA2P51531 1590 aa17.76■□□□□ 0.43
PCDHB11-201ENST00000354757 ERCC6Q03468 1493 aa17.76■□□□□ 0.43
PCDHB11-201ENST00000354757 SMARCA4P51532 1647 aa17.74■□□□□ 0.43
PCDHB11-201ENST00000354757 GTF3C3Q9Y5Q9 886 aa17.74■□□□□ 0.43
PCDHB11-201ENST00000354757 CDK11AQ9UQ88 783 aaPredicted RBP17.74■□□□□ 0.43
PCDHB11-201ENST00000354757 CUX2O14529 1486 aa17.73■□□□□ 0.43
PCDHB11-201ENST00000354757 EEA1Q15075 1411 aa17.72■□□□□ 0.43
PCDHB11-201ENST00000354757 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
PCDHB11-201ENST00000354757 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
PCDHB11-201ENST00000354757 MTUS2Q5JR59 1369 aa17.68■□□□□ 0.42
PCDHB11-201ENST00000354757 TNIKQ9UKE5 1360 aa17.67■□□□□ 0.42
PCDHB11-201ENST00000354757 CEP164Q9UPV0 1460 aa17.65■□□□□ 0.42
PCDHB11-201ENST00000354757 SLC4A1APQ9BWU0 796 aaKnown RBP17.64■□□□□ 0.41
PCDHB11-201ENST00000354757 KCNH8Q96L42 1107 aa17.63■□□□□ 0.41
PCDHB11-201ENST00000354757 CARMIL1Q5VZK9 1371 aa17.63■□□□□ 0.41
PCDHB11-201ENST00000354757 CADPSQ9ULU8 1353 aa17.63■□□□□ 0.41
PCDHB11-201ENST00000354757 RUSC2Q8N2Y8 1516 aa17.61■□□□□ 0.41
PCDHB11-201ENST00000354757 ACIN1Q9UKV3 1341 aaKnown RBP17.61■□□□□ 0.41
PCDHB11-201ENST00000354757 RRP7BPQ9NSQ0 103 aa17.58■□□□□ 0.4
PCDHB11-201ENST00000354757 NPM1P06748 294 aaKnown RBP eCLIP17.55■□□□□ 0.4
PCDHB11-201ENST00000354757 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.54■□□□□ 0.4
PCDHB11-201ENST00000354757 ZNF316A6NFI3 1004 aaPredicted RBP17.53■□□□□ 0.4
PCDHB11-201ENST00000354757 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
PCDHB11-201ENST00000354757 PDS5BQ9NTI5 1447 aa17.51■□□□□ 0.39
PCDHB11-201ENST00000354757 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
PCDHB11-201ENST00000354757 NEFLP07196 543 aa17.51■□□□□ 0.39
PCDHB11-201ENST00000354757 HIRIP3Q9BW71 556 aaPredicted RBP17.49■□□□□ 0.39
PCDHB11-201ENST00000354757 KANK4Q5T7N3 995 aaPredicted RBP17.48■□□□□ 0.39
PCDHB11-201ENST00000354757 EIF4G1Q04637 1599 aaKnown RBP17.48■□□□□ 0.39
PCDHB11-201ENST00000354757 PLEKHD1A6NEE1 506 aa17.45■□□□□ 0.38
PCDHB11-201ENST00000354757 TSPY4P0CV99 314 aa17.44■□□□□ 0.38
PCDHB11-201ENST00000354757 TSPY10P0CW01 314 aa17.44■□□□□ 0.38
PCDHB11-201ENST00000354757 SENP3Q9H4L4 574 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms