RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NISCHQ9Y2I1 1504 aa13.03□□□□□ -0.32
VPS39-202ENST00000348544 AEBP2Q6ZN18 517 aaPredicted RBP13.02□□□□□ -0.33
VPS39-202ENST00000348544 CHIC1Q5VXU3 224 aa12.79□□□□□ -0.36
VPS39-202ENST00000348544 HRCP23327 699 aa11.56□□□□□ -0.56
VPS39-202ENST00000348544 SHROOM4Q9ULL8 1493 aa11.47□□□□□ -0.57
VPS39-202ENST00000348544 SUPT5HO00267 1087 aaKnown RBP11.4□□□□□ -0.59
VPS39-202ENST00000348544 MYO15BQ96JP2 1530 aa11.39□□□□□ -0.59
VPS39-202ENST00000348544 PPARGC1BQ86YN6 1023 aaKnown RBP11.33□□□□□ -0.6
VPS39-202ENST00000348544 PHF23Q9BUL5 403 aaPredicted RBP11.31□□□□□ -0.6
VPS39-202ENST00000348544 PCGF6Q9BYE7 350 aa11.3□□□□□ -0.6
VPS39-202ENST00000348544 DCAF1Q9Y4B6 1507 aa11.1□□□□□ -0.63
VPS39-202ENST00000348544 ZCCHC6Q5VYS8 1495 aaKnown RBP11.1□□□□□ -0.63
VPS39-202ENST00000348544 PELP1Q8IZL8 1130 aaKnown RBP11.04□□□□□ -0.64
VPS39-202ENST00000348544 LOC105371045A0A1W2PR82 267 aa10.98□□□□□ -0.65
VPS39-202ENST00000348544 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
VPS39-202ENST00000348544 TRIM26Q12899 539 aaPredicted RBP10.94□□□□□ -0.66
VPS39-202ENST00000348544 SCAF1Q9H7N4 1312 aaKnown RBP10.93□□□□□ -0.66
VPS39-202ENST00000348544 SENP3Q9H4L4 574 aaPredicted RBP10.93□□□□□ -0.66
VPS39-202ENST00000348544 ZEB1P37275 1124 aaPredicted RBP10.82□□□□□ -0.68
VPS39-202ENST00000348544 DCAF8L2P0C7V8 631 aa10.73□□□□□ -0.69
VPS39-202ENST00000348544 ACIN1Q9UKV3 1341 aaKnown RBP10.65□□□□□ -0.71
VPS39-202ENST00000348544 NEUROD1Q13562 356 aa10.63□□□□□ -0.71
VPS39-202ENST00000348544 MYT1Q01538 1121 aa10.58□□□□□ -0.72
VPS39-202ENST00000348544 ABCC9O60706 1549 aa10.56□□□□□ -0.72
VPS39-202ENST00000348544 GTF3C3Q9Y5Q9 886 aa10.55□□□□□ -0.72
VPS39-202ENST00000348544 FAM9AQ8IZU1 332 aaPredicted RBP10.53□□□□□ -0.72
VPS39-202ENST00000348544 TRIM41Q8WV44 630 aa10.53□□□□□ -0.72
VPS39-202ENST00000348544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.49□□□□□ -0.73
VPS39-202ENST00000348544 RSF1Q96T23 1441 aaPredicted RBP10.48□□□□□ -0.73
VPS39-202ENST00000348544 EHMT2Q96KQ7 1210 aa10.48□□□□□ -0.73
VPS39-202ENST00000348544 RB1CC1Q8TDY2 1594 aa10.46□□□□□ -0.73
VPS39-202ENST00000348544 CENPBP07199 599 aaPredicted RBP10.46□□□□□ -0.74
VPS39-202ENST00000348544 DIEXFQ68CQ4 756 aaKnown RBP10.46□□□□□ -0.74
VPS39-202ENST00000348544 CCER1Q8TC90 406 aaPredicted RBP10.44□□□□□ -0.74
VPS39-202ENST00000348544 PLPPR3Q6T4P5 718 aa10.4□□□□□ -0.75
VPS39-202ENST00000348544 SCRIBQ14160 1630 aa10.32□□□□□ -0.76
VPS39-202ENST00000348544 YTHDC1Q96MU7 727 aaKnown RBP10.28□□□□□ -0.76
VPS39-202ENST00000348544 ZNF316A6NFI3 1004 aaPredicted RBP10.27□□□□□ -0.77
VPS39-202ENST00000348544 TTBK1Q5TCY1 1321 aaPredicted RBP10.24□□□□□ -0.77
VPS39-202ENST00000348544 WRNQ14191 1432 aaPredicted RBP eCLIP10.24□□□□□ -0.77
VPS39-202ENST00000348544 MIER1Q8N108 512 aa10.22□□□□□ -0.77
VPS39-202ENST00000348544 CECR2Q9BXF3 1484 aa10.2□□□□□ -0.78
VPS39-202ENST00000348544 EIF4G1Q04637 1599 aaKnown RBP10.2□□□□□ -0.78
VPS39-202ENST00000348544 FOXD1Q16676 465 aa10.19□□□□□ -0.78
VPS39-202ENST00000348544 MROH2BQ7Z745 1585 aa10.19□□□□□ -0.78
VPS39-202ENST00000348544 CEP162Q5TB80 1403 aa10.17□□□□□ -0.78
VPS39-202ENST00000348544 WIZO95785 1651 aa10.16□□□□□ -0.78
VPS39-202ENST00000348544 CCDC88BA6NC98 1476 aa10.1□□□□□ -0.79
VPS39-202ENST00000348544 TNIKQ9UKE5 1360 aa10.09□□□□□ -0.79
VPS39-202ENST00000348544 ABCC8Q09428 1581 aa10.09□□□□□ -0.79
VPS39-202ENST00000348544 BAZ1AQ9NRL2 1556 aaPredicted RBP10.09□□□□□ -0.79
VPS39-202ENST00000348544 SUPT16HQ9Y5B9 1047 aaKnown RBP10.07□□□□□ -0.8
VPS39-202ENST00000348544 SOGA1O94964 1423 aa10.06□□□□□ -0.8
VPS39-202ENST00000348544 HNRNPUL2Q1KMD3 747 aaKnown RBP10.03□□□□□ -0.8
VPS39-202ENST00000348544 TSHZ2Q9NRE2 1034 aa10.02□□□□□ -0.8
VPS39-202ENST00000348544 NACADO15069 1562 aa10.02□□□□□ -0.81
VPS39-202ENST00000348544 RUSC2Q8N2Y8 1516 aa10.01□□□□□ -0.81
VPS39-202ENST00000348544 ANP32EQ9BTT0 268 aa10.01□□□□□ -0.81
VPS39-202ENST00000348544 CLSPNQ9HAW4 1339 aa10□□□□□ -0.81
VPS39-202ENST00000348544 UBTFP17480 764 aaKnown RBP9.98□□□□□ -0.81
VPS39-202ENST00000348544 CSRNP3Q8WYN3 585 aa9.98□□□□□ -0.81
VPS39-202ENST00000348544 BCL11AQ9H165 835 aa9.98□□□□□ -0.81
VPS39-202ENST00000348544 GOLGA3Q08378 1498 aa9.96□□□□□ -0.81
VPS39-202ENST00000348544 EEA1Q15075 1411 aa9.96□□□□□ -0.81
VPS39-202ENST00000348544 TOP2AP11388 1531 aaKnown RBP9.95□□□□□ -0.82
VPS39-202ENST00000348544 SMARCA2P51531 1590 aa9.94□□□□□ -0.82
VPS39-202ENST00000348544 PPP6R1Q9UPN7 881 aa9.93□□□□□ -0.82
VPS39-202ENST00000348544 ADRA2BP18089 450 aa9.91□□□□□ -0.82
VPS39-202ENST00000348544 CLIP1P30622 1438 aa9.89□□□□□ -0.83
VPS39-202ENST00000348544 DHX57Q6P158 1386 aaKnown RBP9.89□□□□□ -0.83
VPS39-202ENST00000348544 VPS8Q8N3P4 1428 aa9.88□□□□□ -0.83
VPS39-202ENST00000348544 KIF21BO75037 1637 aa9.86□□□□□ -0.83
VPS39-202ENST00000348544 CEP164Q9UPV0 1460 aa9.86□□□□□ -0.83
VPS39-202ENST00000348544 SMARCA4P51532 1647 aa9.85□□□□□ -0.83
VPS39-202ENST00000348544 KCNH8Q96L42 1107 aa9.85□□□□□ -0.83
VPS39-202ENST00000348544 BCANQ96GW7 911 aa9.82□□□□□ -0.84
VPS39-202ENST00000348544 SYNJ1O43426 1573 aa9.79□□□□□ -0.84
VPS39-202ENST00000348544 APLP2Q06481 763 aa9.79□□□□□ -0.84
VPS39-202ENST00000348544 RAPGEF2Q9Y4G8 1499 aa9.79□□□□□ -0.84
VPS39-202ENST00000348544 BAZ1BQ9UIG0 1483 aaKnown RBP9.79□□□□□ -0.84
VPS39-202ENST00000348544 FKBP8Q14318 412 aa9.78□□□□□ -0.84
VPS39-202ENST00000348544 RBM19Q9Y4C8 960 aaKnown RBP9.77□□□□□ -0.85
VPS39-202ENST00000348544 RANGAP1P46060 587 aaPredicted RBP9.75□□□□□ -0.85
VPS39-202ENST00000348544 CUX2O14529 1486 aa9.73□□□□□ -0.85
VPS39-202ENST00000348544 KANK4Q5T7N3 995 aaPredicted RBP9.72□□□□□ -0.85
VPS39-202ENST00000348544 MSH5O43196 834 aa9.72□□□□□ -0.85
VPS39-202ENST00000348544 RRBP1Q9P2E9 1410 aaKnown RBP9.71□□□□□ -0.85
VPS39-202ENST00000348544 ARAP1Q96P48 1450 aa9.71□□□□□ -0.86
VPS39-202ENST00000348544 MAPKBP1O60336 1514 aa9.69□□□□□ -0.86
VPS39-202ENST00000348544 ITGAEP38570 1179 aa9.69□□□□□ -0.86
VPS39-202ENST00000348544 DDX10Q13206 875 aaKnown RBP9.67□□□□□ -0.86
VPS39-202ENST00000348544 WDR97A6NE52 1622 aa9.65□□□□□ -0.86
VPS39-202ENST00000348544 NEFLP07196 543 aa9.65□□□□□ -0.87
VPS39-202ENST00000348544 UNC13AQ9UPW8 1703 aa9.65□□□□□ -0.87
VPS39-202ENST00000348544 CCNB3Q8WWL7 1395 aa9.64□□□□□ -0.87
VPS39-202ENST00000348544 PPP1R15AO75807 674 aaPredicted RBP9.64□□□□□ -0.87
VPS39-202ENST00000348544 TRIM52Q96A61 297 aa9.64□□□□□ -0.87
VPS39-202ENST00000348544 RAB3GAP2Q9H2M9 1393 aa9.63□□□□□ -0.87
VPS39-202ENST00000348544 ERICH3Q5RHP9 1530 aa9.62□□□□□ -0.87
VPS39-202ENST00000348544 PRXQ9BXM0 1461 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms