RNA–Protein interactions for RNA: ENST00000331493.6

EFCAB13-201, Transcript of EF-hand calcium binding domain 13, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene EFCAB13, Length 3,931 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFCAB13-201ENST00000331493 NISCHQ9Y2I1 1504 aa23.1■■□□□ 1.29
EFCAB13-201ENST00000331493 SHROOM4Q9ULL8 1493 aa20.86■□□□□ 0.93
EFCAB13-201ENST00000331493 SUPT5HO00267 1087 aaKnown RBP20.63■□□□□ 0.89
EFCAB13-201ENST00000331493 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
EFCAB13-201ENST00000331493 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.73
EFCAB13-201ENST00000331493 PCGF6Q9BYE7 350 aa19.57■□□□□ 0.72
EFCAB13-201ENST00000331493 ZCCHC6Q5VYS8 1495 aaKnown RBP19.44■□□□□ 0.7
EFCAB13-201ENST00000331493 EHMT2Q96KQ7 1210 aa19.42■□□□□ 0.7
EFCAB13-201ENST00000331493 LOC105371045A0A1W2PR82 267 aa19.38■□□□□ 0.69
EFCAB13-201ENST00000331493 MYO15BQ96JP2 1530 aa19.33■□□□□ 0.69
EFCAB13-201ENST00000331493 FAM9AQ8IZU1 332 aaPredicted RBP19.23■□□□□ 0.67
EFCAB13-201ENST00000331493 HRCP23327 699 aa19.22■□□□□ 0.67
EFCAB13-201ENST00000331493 PPARGC1BQ86YN6 1023 aaKnown RBP19.22■□□□□ 0.67
EFCAB13-201ENST00000331493 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
EFCAB13-201ENST00000331493 TRIM41Q8WV44 630 aa18.95■□□□□ 0.62
EFCAB13-201ENST00000331493 TRIM26Q12899 539 aaPredicted RBP18.77■□□□□ 0.6
EFCAB13-201ENST00000331493 TTBK1Q5TCY1 1321 aaPredicted RBP18.76■□□□□ 0.59
EFCAB13-201ENST00000331493 SCRIBQ14160 1630 aa18.68■□□□□ 0.58
EFCAB13-201ENST00000331493 ABCC9O60706 1549 aa18.63■□□□□ 0.57
EFCAB13-201ENST00000331493 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
EFCAB13-201ENST00000331493 RSF1Q96T23 1441 aaPredicted RBP18.52■□□□□ 0.55
EFCAB13-201ENST00000331493 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.36■□□□□ 0.53
EFCAB13-201ENST00000331493 CCER1Q8TC90 406 aaPredicted RBP18.34■□□□□ 0.53
EFCAB13-201ENST00000331493 ZEB1P37275 1124 aaPredicted RBP18.34■□□□□ 0.53
EFCAB13-201ENST00000331493 RB1CC1Q8TDY2 1594 aa18.33■□□□□ 0.52
EFCAB13-201ENST00000331493 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
EFCAB13-201ENST00000331493 RANGAP1P46060 587 aaPredicted RBP18.28■□□□□ 0.52
EFCAB13-201ENST00000331493 UBTFP17480 764 aaKnown RBP18.23■□□□□ 0.51
EFCAB13-201ENST00000331493 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
EFCAB13-201ENST00000331493 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
EFCAB13-201ENST00000331493 WIZO95785 1651 aa18.02■□□□□ 0.48
EFCAB13-201ENST00000331493 HNRNPUL2Q1KMD3 747 aaKnown RBP17.97■□□□□ 0.47
EFCAB13-201ENST00000331493 YTHDC1Q96MU7 727 aaKnown RBP17.93■□□□□ 0.46
EFCAB13-201ENST00000331493 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
EFCAB13-201ENST00000331493 NACADO15069 1562 aa17.92■□□□□ 0.46
EFCAB13-201ENST00000331493 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
EFCAB13-201ENST00000331493 ABCC8Q09428 1581 aa17.88■□□□□ 0.45
EFCAB13-201ENST00000331493 APLP2Q06481 763 aa17.87■□□□□ 0.45
EFCAB13-201ENST00000331493 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
EFCAB13-201ENST00000331493 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
EFCAB13-201ENST00000331493 SOGA1O94964 1423 aa17.81■□□□□ 0.44
EFCAB13-201ENST00000331493 NEUROD1Q13562 356 aa17.76■□□□□ 0.43
EFCAB13-201ENST00000331493 CEP162Q5TB80 1403 aa17.74■□□□□ 0.43
EFCAB13-201ENST00000331493 CENPBP07199 599 aaPredicted RBP17.73■□□□□ 0.43
EFCAB13-201ENST00000331493 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
EFCAB13-201ENST00000331493 GTF3C3Q9Y5Q9 886 aa17.71■□□□□ 0.43
EFCAB13-201ENST00000331493 RUSC2Q8N2Y8 1516 aa17.7■□□□□ 0.42
EFCAB13-201ENST00000331493 ACIN1Q9UKV3 1341 aaKnown RBP17.68■□□□□ 0.42
EFCAB13-201ENST00000331493 ITGAEP38570 1179 aa17.64■□□□□ 0.41
EFCAB13-201ENST00000331493 ZNF316A6NFI3 1004 aaPredicted RBP17.58■□□□□ 0.4
EFCAB13-201ENST00000331493 TNIKQ9UKE5 1360 aa17.55■□□□□ 0.4
EFCAB13-201ENST00000331493 TOP2AP11388 1531 aaKnown RBP17.53■□□□□ 0.4
EFCAB13-201ENST00000331493 WRNQ14191 1432 aaPredicted RBP eCLIP17.52■□□□□ 0.4
EFCAB13-201ENST00000331493 SMARCA4P51532 1647 aa17.52■□□□□ 0.39
EFCAB13-201ENST00000331493 ATP1B4Q9UN42 357 aaPredicted RBP17.51■□□□□ 0.39
EFCAB13-201ENST00000331493 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
EFCAB13-201ENST00000331493 SMARCA2P51531 1590 aa17.49■□□□□ 0.39
EFCAB13-201ENST00000331493 MIER1Q8N108 512 aa17.47■□□□□ 0.39
EFCAB13-201ENST00000331493 GOLGA3Q08378 1498 aa17.45■□□□□ 0.38
EFCAB13-201ENST00000331493 CLIP1P30622 1438 aa17.45■□□□□ 0.38
EFCAB13-201ENST00000331493 EEA1Q15075 1411 aa17.37■□□□□ 0.37
EFCAB13-201ENST00000331493 EIF4G1Q04637 1599 aaKnown RBP17.31■□□□□ 0.36
EFCAB13-201ENST00000331493 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
EFCAB13-201ENST00000331493 CEP164Q9UPV0 1460 aa17.3■□□□□ 0.36
EFCAB13-201ENST00000331493 P3H3Q8IVL6 736 aa17.3■□□□□ 0.36
EFCAB13-201ENST00000331493 RAPGEF2Q9Y4G8 1499 aa17.28■□□□□ 0.36
EFCAB13-201ENST00000331493 KANK4Q5T7N3 995 aaPredicted RBP17.27■□□□□ 0.35
EFCAB13-201ENST00000331493 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
EFCAB13-201ENST00000331493 SYNJ1O43426 1573 aa17.22■□□□□ 0.35
EFCAB13-201ENST00000331493 FAM50AQ14320 339 aaKnown RBP17.21■□□□□ 0.35
EFCAB13-201ENST00000331493 VPS8Q8N3P4 1428 aa17.2■□□□□ 0.34
EFCAB13-201ENST00000331493 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
EFCAB13-201ENST00000331493 BICRAQ9NZM4 1560 aa17.12■□□□□ 0.33
EFCAB13-201ENST00000331493 HIRIP3Q9BW71 556 aaPredicted RBP17.11■□□□□ 0.33
EFCAB13-201ENST00000331493 BCANQ96GW7 911 aa17.06■□□□□ 0.32
EFCAB13-201ENST00000331493 KIF21BO75037 1637 aa17.02■□□□□ 0.31
EFCAB13-201ENST00000331493 DDX10Q13206 875 aaKnown RBP17■□□□□ 0.31
EFCAB13-201ENST00000331493 SIN3AQ96ST3 1273 aa17■□□□□ 0.31
EFCAB13-201ENST00000331493 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
EFCAB13-201ENST00000331493 DHX57Q6P158 1386 aaKnown RBP16.98■□□□□ 0.31
EFCAB13-201ENST00000331493 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
EFCAB13-201ENST00000331493 ARID3CA6NKF2 412 aa16.94■□□□□ 0.3
EFCAB13-201ENST00000331493 CCNB3Q8WWL7 1395 aa16.92■□□□□ 0.3
EFCAB13-201ENST00000331493 ARAP1Q96P48 1450 aa16.92■□□□□ 0.3
EFCAB13-201ENST00000331493 CUX2O14529 1486 aa16.9■□□□□ 0.3
EFCAB13-201ENST00000331493 CNGB1Q14028 1251 aaPredicted RBP16.87■□□□□ 0.29
EFCAB13-201ENST00000331493 TRIM52Q96A61 297 aa16.85■□□□□ 0.29
EFCAB13-201ENST00000331493 RAB3GAP2Q9H2M9 1393 aa16.84■□□□□ 0.29
EFCAB13-201ENST00000331493 TOP2BQ02880 1626 aa16.83■□□□□ 0.28
EFCAB13-201ENST00000331493 SUPT16HQ9Y5B9 1047 aaKnown RBP16.83■□□□□ 0.28
EFCAB13-201ENST00000331493 CARMIL1Q5VZK9 1371 aa16.82■□□□□ 0.28
EFCAB13-201ENST00000331493 PEG3Q9GZU2 1588 aa16.82■□□□□ 0.28
EFCAB13-201ENST00000331493 PRXQ9BXM0 1461 aa16.81■□□□□ 0.28
EFCAB13-201ENST00000331493 CUX1P39880 1505 aa16.81■□□□□ 0.28
EFCAB13-201ENST00000331493 CLSPNQ9HAW4 1339 aa16.79■□□□□ 0.28
EFCAB13-201ENST00000331493 FKBP8Q14318 412 aa16.78■□□□□ 0.28
EFCAB13-201ENST00000331493 CHIC2Q9UKJ5 165 aa16.78■□□□□ 0.28
EFCAB13-201ENST00000331493 NEFLP07196 543 aa16.77■□□□□ 0.27
EFCAB13-201ENST00000331493 ARHGAP35Q9NRY4 1499 aa16.76■□□□□ 0.27
EFCAB13-201ENST00000331493 IGF1RP08069 1367 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms