RNA–Protein interactions for RNA: ENST00000324309.8

CCDC149-201, Transcript of coiled-coil domain containing 149, humanhuman

TSL 2

Gene CCDC149, Length 5,604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC149-201ENST00000324309 NISCHQ9Y2I1 1504 aa24.22■■□□□ 1.47
CCDC149-201ENST00000324309 DCAF8L2P0C7V8 631 aa22.97■■□□□ 1.27
CCDC149-201ENST00000324309 SHROOM4Q9ULL8 1493 aa21.3■■□□□ 1
CCDC149-201ENST00000324309 SUPT5HO00267 1087 aaKnown RBP21.26■□□□□ 0.99
CCDC149-201ENST00000324309 FAM9AQ8IZU1 332 aaPredicted RBP20.83■□□□□ 0.92
CCDC149-201ENST00000324309 CCDC180Q9P1Z9 1646 aa20.78■□□□□ 0.92
CCDC149-201ENST00000324309 ABCC9O60706 1549 aa20.73■□□□□ 0.91
CCDC149-201ENST00000324309 APLP2Q06481 763 aa20.36■□□□□ 0.85
CCDC149-201ENST00000324309 TRIM41Q8WV44 630 aa20.15■□□□□ 0.82
CCDC149-201ENST00000324309 ZCCHC6Q5VYS8 1495 aaKnown RBP20.11■□□□□ 0.81
CCDC149-201ENST00000324309 RB1CC1Q8TDY2 1594 aa20.1■□□□□ 0.81
CCDC149-201ENST00000324309 PABPN1Q86U42 306 aaKnown RBP eCLIP20.01■□□□□ 0.79
CCDC149-201ENST00000324309 NACADO15069 1562 aa19.99■□□□□ 0.79
CCDC149-201ENST00000324309 EHMT2Q96KQ7 1210 aa19.8■□□□□ 0.76
CCDC149-201ENST00000324309 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
CCDC149-201ENST00000324309 UBTFP17480 764 aaKnown RBP19.75■□□□□ 0.75
CCDC149-201ENST00000324309 DCAF1Q9Y4B6 1507 aa19.74■□□□□ 0.75
CCDC149-201ENST00000324309 ATP1B4Q9UN42 357 aaPredicted RBP19.55■□□□□ 0.72
CCDC149-201ENST00000324309 MYO15BQ96JP2 1530 aa19.48■□□□□ 0.71
CCDC149-201ENST00000324309 RANGAP1P46060 587 aaPredicted RBP19.44■□□□□ 0.7
CCDC149-201ENST00000324309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
CCDC149-201ENST00000324309 HNRNPUL2Q1KMD3 747 aaKnown RBP19.24■□□□□ 0.67
CCDC149-201ENST00000324309 CHIC1Q5VXU3 224 aa19.24■□□□□ 0.67
CCDC149-201ENST00000324309 ZEB1P37275 1124 aaPredicted RBP19.22■□□□□ 0.67
CCDC149-201ENST00000324309 BAZ1AQ9NRL2 1556 aaPredicted RBP19.16■□□□□ 0.66
CCDC149-201ENST00000324309 BAZ1BQ9UIG0 1483 aaKnown RBP19.13■□□□□ 0.65
CCDC149-201ENST00000324309 TTBK1Q5TCY1 1321 aaPredicted RBP19.08■□□□□ 0.64
CCDC149-201ENST00000324309 MYT1LQ9UL68 1186 aa19.07■□□□□ 0.64
CCDC149-201ENST00000324309 FBLN2P98095 1184 aa18.99■□□□□ 0.63
CCDC149-201ENST00000324309 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
CCDC149-201ENST00000324309 RSF1Q96T23 1441 aaPredicted RBP18.93■□□□□ 0.62
CCDC149-201ENST00000324309 CCER1Q8TC90 406 aaPredicted RBP18.92■□□□□ 0.62
CCDC149-201ENST00000324309 CSRNP3Q8WYN3 585 aa18.9■□□□□ 0.62
CCDC149-201ENST00000324309 PCGF6Q9BYE7 350 aa18.89■□□□□ 0.61
CCDC149-201ENST00000324309 CDK11AQ9UQ88 783 aaPredicted RBP18.87■□□□□ 0.61
CCDC149-201ENST00000324309 PELP1Q8IZL8 1130 aaKnown RBP18.85■□□□□ 0.61
CCDC149-201ENST00000324309 TRIM26Q12899 539 aaPredicted RBP18.84■□□□□ 0.61
CCDC149-201ENST00000324309 ERCC6Q03468 1493 aa18.82■□□□□ 0.6
CCDC149-201ENST00000324309 EEA1Q15075 1411 aa18.81■□□□□ 0.6
CCDC149-201ENST00000324309 NPM1P06748 294 aaKnown RBP eCLIP18.77■□□□□ 0.6
CCDC149-201ENST00000324309 PDS5BQ9NTI5 1447 aa18.7■□□□□ 0.58
CCDC149-201ENST00000324309 CHMP7Q8WUX9 453 aaPredicted RBP18.68■□□□□ 0.58
CCDC149-201ENST00000324309 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.58
CCDC149-201ENST00000324309 WRNQ14191 1432 aaPredicted RBP eCLIP18.64■□□□□ 0.57
CCDC149-201ENST00000324309 ITGAEP38570 1179 aa18.6■□□□□ 0.57
CCDC149-201ENST00000324309 KIF27Q86VH2 1401 aa18.6■□□□□ 0.57
CCDC149-201ENST00000324309 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
CCDC149-201ENST00000324309 FAM50AQ14320 339 aaKnown RBP18.58■□□□□ 0.56
CCDC149-201ENST00000324309 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
CCDC149-201ENST00000324309 MROH2BQ7Z745 1585 aa18.49■□□□□ 0.55
CCDC149-201ENST00000324309 ACIN1Q9UKV3 1341 aaKnown RBP18.48■□□□□ 0.55
CCDC149-201ENST00000324309 SMARCA4P51532 1647 aa18.47■□□□□ 0.55
CCDC149-201ENST00000324309 PPARGC1BQ86YN6 1023 aaKnown RBP18.45■□□□□ 0.54
CCDC149-201ENST00000324309 ATAD2BQ9ULI0 1458 aa18.45■□□□□ 0.54
CCDC149-201ENST00000324309 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
CCDC149-201ENST00000324309 GOLGA3Q08378 1498 aa18.43■□□□□ 0.54
CCDC149-201ENST00000324309 TRIM52Q96A61 297 aa18.42■□□□□ 0.54
CCDC149-201ENST00000324309 CADPSQ9ULU8 1353 aa18.41■□□□□ 0.54
CCDC149-201ENST00000324309 ESF1Q9H501 851 aaKnown RBP18.4■□□□□ 0.54
CCDC149-201ENST00000324309 CEP164Q9UPV0 1460 aa18.4■□□□□ 0.54
CCDC149-201ENST00000324309 P3H3Q8IVL6 736 aa18.4■□□□□ 0.54
CCDC149-201ENST00000324309 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
CCDC149-201ENST00000324309 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
CCDC149-201ENST00000324309 NCAPD3P42695 1498 aa18.29■□□□□ 0.52
CCDC149-201ENST00000324309 CLIP1P30622 1438 aa18.27■□□□□ 0.51
CCDC149-201ENST00000324309 MTUS2Q5JR59 1369 aa18.25■□□□□ 0.51
CCDC149-201ENST00000324309 EIF4G1Q04637 1599 aaKnown RBP18.24■□□□□ 0.51
CCDC149-201ENST00000324309 ZNF777Q9ULD5 760 aaPredicted RBP18.24■□□□□ 0.51
CCDC149-201ENST00000324309 CUX2O14529 1486 aa18.24■□□□□ 0.51
CCDC149-201ENST00000324309 PLEKHD1A6NEE1 506 aa18.24■□□□□ 0.51
CCDC149-201ENST00000324309 SOGA1O94964 1423 aa18.21■□□□□ 0.51
CCDC149-201ENST00000324309 WIZO95785 1651 aa18.2■□□□□ 0.5
CCDC149-201ENST00000324309 CARMIL2Q6F5E8 1435 aa18.19■□□□□ 0.5
CCDC149-201ENST00000324309 TSPY4P0CV99 314 aa18.18■□□□□ 0.5
CCDC149-201ENST00000324309 TSPY10P0CW01 314 aa18.18■□□□□ 0.5
CCDC149-201ENST00000324309 CARMIL1Q5VZK9 1371 aa18.18■□□□□ 0.5
CCDC149-201ENST00000324309 TNIKQ9UKE5 1360 aa18.18■□□□□ 0.5
CCDC149-201ENST00000324309 FHAD1B1AJZ9 1412 aa18.17■□□□□ 0.5
CCDC149-201ENST00000324309 ARID3CA6NKF2 412 aa18.16■□□□□ 0.5
CCDC149-201ENST00000324309 FANCD2Q9BXW9 1451 aa18.13■□□□□ 0.49
CCDC149-201ENST00000324309 NEFLP07196 543 aa18.12■□□□□ 0.49
CCDC149-201ENST00000324309 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
CCDC149-201ENST00000324309 POLR3GLQ9BT43 218 aa18.09■□□□□ 0.49
CCDC149-201ENST00000324309 STAG3Q9UJ98 1225 aa18.04■□□□□ 0.48
CCDC149-201ENST00000324309 BCANQ96GW7 911 aa18.03■□□□□ 0.48
CCDC149-201ENST00000324309 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
CCDC149-201ENST00000324309 CEP162Q5TB80 1403 aa18.03■□□□□ 0.48
CCDC149-201ENST00000324309 CC2D2AQ9P2K1 1620 aa17.97■□□□□ 0.47
CCDC149-201ENST00000324309 NEUROD1Q13562 356 aa17.95■□□□□ 0.46
CCDC149-201ENST00000324309 HRCP23327 699 aa17.94■□□□□ 0.46
CCDC149-201ENST00000324309 FMN1Q68DA7 1419 aa17.93■□□□□ 0.46
CCDC149-201ENST00000324309 RAPGEF2Q9Y4G8 1499 aa17.93■□□□□ 0.46
CCDC149-201ENST00000324309 KCNH8Q96L42 1107 aa17.91■□□□□ 0.46
CCDC149-201ENST00000324309 CFDP1Q9UEE9 299 aaPredicted RBP17.9■□□□□ 0.46
CCDC149-201ENST00000324309 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
CCDC149-201ENST00000324309 MRC2Q9UBG0 1479 aa17.87■□□□□ 0.45
CCDC149-201ENST00000324309 CCNB3Q8WWL7 1395 aa17.87■□□□□ 0.45
CCDC149-201ENST00000324309 ZNF326Q5BKZ1 582 aaKnown RBP17.86■□□□□ 0.45
CCDC149-201ENST00000324309 TONSLQ96HA7 1378 aa17.86■□□□□ 0.45
CCDC149-201ENST00000324309 CFTRP13569 1480 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms