RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 NISCHQ9Y2I1 1504 aa17.65■□□□□ 0.42
PTPRE-202ENST00000306042 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
PTPRE-202ENST00000306042 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
PTPRE-202ENST00000306042 SUPT5HO00267 1087 aaKnown RBP15.86■□□□□ 0.13
PTPRE-202ENST00000306042 ABCC9O60706 1549 aa15.51■□□□□ 0.07
PTPRE-202ENST00000306042 FAM9AQ8IZU1 332 aaPredicted RBP15.17■□□□□ 0.02
PTPRE-202ENST00000306042 PABPN1Q86U42 306 aaKnown RBP eCLIP15.11■□□□□ 0.01
PTPRE-202ENST00000306042 EHMT2Q96KQ7 1210 aa15.09■□□□□ 0.01
PTPRE-202ENST00000306042 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
PTPRE-202ENST00000306042 TRIM41Q8WV44 630 aa14.81□□□□□ -0.04
PTPRE-202ENST00000306042 APLP2Q06481 763 aa14.8□□□□□ -0.04
PTPRE-202ENST00000306042 RANGAP1P46060 587 aaPredicted RBP14.7□□□□□ -0.06
PTPRE-202ENST00000306042 ATP1B4Q9UN42 357 aaPredicted RBP14.59□□□□□ -0.07
PTPRE-202ENST00000306042 RB1CC1Q8TDY2 1594 aa14.58□□□□□ -0.07
PTPRE-202ENST00000306042 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
PTPRE-202ENST00000306042 UBTFP17480 764 aaKnown RBP14.58□□□□□ -0.08
PTPRE-202ENST00000306042 SCRIBQ14160 1630 aa14.57□□□□□ -0.08
PTPRE-202ENST00000306042 TTBK1Q5TCY1 1321 aaPredicted RBP14.44□□□□□ -0.1
PTPRE-202ENST00000306042 NACADO15069 1562 aa14.43□□□□□ -0.1
PTPRE-202ENST00000306042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
PTPRE-202ENST00000306042 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
PTPRE-202ENST00000306042 FBLN2P98095 1184 aa14.27□□□□□ -0.13
PTPRE-202ENST00000306042 MYT1LQ9UL68 1186 aa14.18□□□□□ -0.14
PTPRE-202ENST00000306042 CHIC1Q5VXU3 224 aa14.14□□□□□ -0.15
PTPRE-202ENST00000306042 DCAF1Q9Y4B6 1507 aa14.09□□□□□ -0.15
PTPRE-202ENST00000306042 BAZ1BQ9UIG0 1483 aaKnown RBP13.99□□□□□ -0.17
PTPRE-202ENST00000306042 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
PTPRE-202ENST00000306042 PCGF6Q9BYE7 350 aa13.96□□□□□ -0.17
PTPRE-202ENST00000306042 LOC105371045A0A1W2PR82 267 aa13.95□□□□□ -0.18
PTPRE-202ENST00000306042 ERCC6Q03468 1493 aa13.91□□□□□ -0.18
PTPRE-202ENST00000306042 ITGAEP38570 1179 aa13.9□□□□□ -0.18
PTPRE-202ENST00000306042 BAZ1AQ9NRL2 1556 aaPredicted RBP13.88□□□□□ -0.19
PTPRE-202ENST00000306042 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
PTPRE-202ENST00000306042 RSF1Q96T23 1441 aaPredicted RBP13.88□□□□□ -0.19
PTPRE-202ENST00000306042 CSRNP3Q8WYN3 585 aa13.84□□□□□ -0.19
PTPRE-202ENST00000306042 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
PTPRE-202ENST00000306042 CCER1Q8TC90 406 aaPredicted RBP13.83□□□□□ -0.2
PTPRE-202ENST00000306042 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
PTPRE-202ENST00000306042 P3H3Q8IVL6 736 aa13.82□□□□□ -0.2
PTPRE-202ENST00000306042 NPM1P06748 294 aaKnown RBP eCLIP13.81□□□□□ -0.2
PTPRE-202ENST00000306042 ARID3CA6NKF2 412 aa13.78□□□□□ -0.2
PTPRE-202ENST00000306042 FAM50AQ14320 339 aaKnown RBP13.71□□□□□ -0.21
PTPRE-202ENST00000306042 SMARCA2P51531 1590 aa13.71□□□□□ -0.21
PTPRE-202ENST00000306042 CDK11AQ9UQ88 783 aaPredicted RBP13.7□□□□□ -0.22
PTPRE-202ENST00000306042 PDS5BQ9NTI5 1447 aa13.64□□□□□ -0.23
PTPRE-202ENST00000306042 MROH2BQ7Z745 1585 aa13.62□□□□□ -0.23
PTPRE-202ENST00000306042 TRIM26Q12899 539 aaPredicted RBP13.61□□□□□ -0.23
PTPRE-202ENST00000306042 WRNQ14191 1432 aaPredicted RBP eCLIP13.61□□□□□ -0.23
PTPRE-202ENST00000306042 ZEB1P37275 1124 aaPredicted RBP13.59□□□□□ -0.23
PTPRE-202ENST00000306042 ZNF777Q9ULD5 760 aaPredicted RBP13.59□□□□□ -0.23
PTPRE-202ENST00000306042 TRIM52Q96A61 297 aa13.57□□□□□ -0.24
PTPRE-202ENST00000306042 ESF1Q9H501 851 aaKnown RBP13.53□□□□□ -0.24
PTPRE-202ENST00000306042 ATAD2BQ9ULI0 1458 aa13.53□□□□□ -0.24
PTPRE-202ENST00000306042 KIF27Q86VH2 1401 aa13.51□□□□□ -0.25
PTPRE-202ENST00000306042 CADPSQ9ULU8 1353 aa13.5□□□□□ -0.25
PTPRE-202ENST00000306042 CCDC88BA6NC98 1476 aa13.48□□□□□ -0.25
PTPRE-202ENST00000306042 POLR3GLQ9BT43 218 aa13.45□□□□□ -0.26
PTPRE-202ENST00000306042 SMARCA4P51532 1647 aa13.45□□□□□ -0.26
PTPRE-202ENST00000306042 KCNH8Q96L42 1107 aa13.42□□□□□ -0.26
PTPRE-202ENST00000306042 EEA1Q15075 1411 aa13.42□□□□□ -0.26
PTPRE-202ENST00000306042 TOP2AP11388 1531 aaKnown RBP13.41□□□□□ -0.26
PTPRE-202ENST00000306042 EIF4G1Q04637 1599 aaKnown RBP13.41□□□□□ -0.26
PTPRE-202ENST00000306042 WIZO95785 1651 aa13.41□□□□□ -0.26
PTPRE-202ENST00000306042 PLPPR3Q6T4P5 718 aa13.41□□□□□ -0.26
PTPRE-202ENST00000306042 CUX2O14529 1486 aa13.4□□□□□ -0.26
PTPRE-202ENST00000306042 BCANQ96GW7 911 aa13.4□□□□□ -0.26
PTPRE-202ENST00000306042 CEP164Q9UPV0 1460 aa13.39□□□□□ -0.27
PTPRE-202ENST00000306042 SOGA1O94964 1423 aa13.38□□□□□ -0.27
PTPRE-202ENST00000306042 PLEKHD1A6NEE1 506 aa13.38□□□□□ -0.27
PTPRE-202ENST00000306042 SLC4A1APQ9BWU0 796 aaKnown RBP13.38□□□□□ -0.27
PTPRE-202ENST00000306042 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
PTPRE-202ENST00000306042 TDRD9Q8NDG6 1382 aaKnown RBP13.36□□□□□ -0.27
PTPRE-202ENST00000306042 MTUS2Q5JR59 1369 aa13.35□□□□□ -0.27
PTPRE-202ENST00000306042 NCAPD3P42695 1498 aa13.32□□□□□ -0.28
PTPRE-202ENST00000306042 CARMIL1Q5VZK9 1371 aa13.32□□□□□ -0.28
PTPRE-202ENST00000306042 TSPY4P0CV99 314 aa13.32□□□□□ -0.28
PTPRE-202ENST00000306042 TSPY10P0CW01 314 aa13.32□□□□□ -0.28
PTPRE-202ENST00000306042 CLIP1P30622 1438 aa13.32□□□□□ -0.28
PTPRE-202ENST00000306042 FANCD2Q9BXW9 1451 aa13.31□□□□□ -0.28
PTPRE-202ENST00000306042 STAG3Q9UJ98 1225 aa13.31□□□□□ -0.28
PTPRE-202ENST00000306042 GOLGA3Q08378 1498 aa13.31□□□□□ -0.28
PTPRE-202ENST00000306042 NEUROD1Q13562 356 aa13.3□□□□□ -0.28
PTPRE-202ENST00000306042 ZNF326Q5BKZ1 582 aaKnown RBP13.3□□□□□ -0.28
PTPRE-202ENST00000306042 CC2D2AQ9P2K1 1620 aa13.27□□□□□ -0.29
PTPRE-202ENST00000306042 CHGAP10645 457 aaKnown RBP13.25□□□□□ -0.29
PTPRE-202ENST00000306042 CNGB1Q14028 1251 aaPredicted RBP13.24□□□□□ -0.29
PTPRE-202ENST00000306042 ABCC8Q09428 1581 aa13.23□□□□□ -0.29
PTPRE-202ENST00000306042 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRE-202ENST00000306042 CHIC2Q9UKJ5 165 aa13.23□□□□□ -0.29
PTPRE-202ENST00000306042 DNAJC5BQ9UF47 199 aa13.23□□□□□ -0.29
PTPRE-202ENST00000306042 ARID4BQ4LE39 1312 aaPredicted RBP13.23□□□□□ -0.29
PTPRE-202ENST00000306042 CARMIL2Q6F5E8 1435 aa13.21□□□□□ -0.29
PTPRE-202ENST00000306042 OSCARQ8IYS5 282 aa13.21□□□□□ -0.3
PTPRE-202ENST00000306042 PELP1Q8IZL8 1130 aaKnown RBP13.19□□□□□ -0.3
PTPRE-202ENST00000306042 CFDP1Q9UEE9 299 aaPredicted RBP13.17□□□□□ -0.3
PTPRE-202ENST00000306042 CEP162Q5TB80 1403 aa13.15□□□□□ -0.3
PTPRE-202ENST00000306042 TNIKQ9UKE5 1360 aa13.13□□□□□ -0.31
PTPRE-202ENST00000306042 BICRAQ9NZM4 1560 aa13.13□□□□□ -0.31
PTPRE-202ENST00000306042 JPH4Q96JJ6 628 aa13.11□□□□□ -0.31
PTPRE-202ENST00000306042 CYB5RLQ6IPT4 315 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms