RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 NISCHQ9Y2I1 1504 aa21.02■□□□□ 0.96
ZNF558-201ENST00000301475 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
ZNF558-201ENST00000301475 HRCP23327 699 aa18.44■□□□□ 0.54
ZNF558-201ENST00000301475 SUPT5HO00267 1087 aaKnown RBP18.32■□□□□ 0.52
ZNF558-201ENST00000301475 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
ZNF558-201ENST00000301475 PCGF6Q9BYE7 350 aa18.09■□□□□ 0.49
ZNF558-201ENST00000301475 PPARGC1BQ86YN6 1023 aaKnown RBP18.08■□□□□ 0.49
ZNF558-201ENST00000301475 CHIC1Q5VXU3 224 aa18.05■□□□□ 0.48
ZNF558-201ENST00000301475 CCDC180Q9P1Z9 1646 aa17.92■□□□□ 0.46
ZNF558-201ENST00000301475 ZCCHC6Q5VYS8 1495 aaKnown RBP17.91■□□□□ 0.46
ZNF558-201ENST00000301475 DCAF8L2P0C7V8 631 aa17.9■□□□□ 0.46
ZNF558-201ENST00000301475 DCAF1Q9Y4B6 1507 aa17.78■□□□□ 0.44
ZNF558-201ENST00000301475 LOC105371045A0A1W2PR82 267 aa17.6■□□□□ 0.41
ZNF558-201ENST00000301475 PELP1Q8IZL8 1130 aaKnown RBP17.55■□□□□ 0.4
ZNF558-201ENST00000301475 TRIM26Q12899 539 aaPredicted RBP17.52■□□□□ 0.4
ZNF558-201ENST00000301475 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
ZNF558-201ENST00000301475 ABCC9O60706 1549 aa17.34■□□□□ 0.37
ZNF558-201ENST00000301475 ZEB1P37275 1124 aaPredicted RBP17.31■□□□□ 0.36
ZNF558-201ENST00000301475 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
ZNF558-201ENST00000301475 NEUROD1Q13562 356 aa16.96■□□□□ 0.3
ZNF558-201ENST00000301475 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
ZNF558-201ENST00000301475 FAM9AQ8IZU1 332 aaPredicted RBP16.94■□□□□ 0.3
ZNF558-201ENST00000301475 SCRIBQ14160 1630 aa16.92■□□□□ 0.3
ZNF558-201ENST00000301475 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
ZNF558-201ENST00000301475 RB1CC1Q8TDY2 1594 aa16.87■□□□□ 0.29
ZNF558-201ENST00000301475 EHMT2Q96KQ7 1210 aa16.85■□□□□ 0.29
ZNF558-201ENST00000301475 GTF3C3Q9Y5Q9 886 aa16.83■□□□□ 0.28
ZNF558-201ENST00000301475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.81■□□□□ 0.28
ZNF558-201ENST00000301475 MYT1Q01538 1121 aa16.79■□□□□ 0.28
ZNF558-201ENST00000301475 NACADO15069 1562 aa16.77■□□□□ 0.27
ZNF558-201ENST00000301475 CCER1Q8TC90 406 aaPredicted RBP16.74■□□□□ 0.27
ZNF558-201ENST00000301475 DIEXFQ68CQ4 756 aaKnown RBP16.72■□□□□ 0.27
ZNF558-201ENST00000301475 CENPBP07199 599 aaPredicted RBP16.72■□□□□ 0.27
ZNF558-201ENST00000301475 PABPN1Q86U42 306 aaKnown RBP eCLIP16.56■□□□□ 0.24
ZNF558-201ENST00000301475 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
ZNF558-201ENST00000301475 TTBK1Q5TCY1 1321 aaPredicted RBP16.45■□□□□ 0.22
ZNF558-201ENST00000301475 YTHDC1Q96MU7 727 aaKnown RBP16.44■□□□□ 0.22
ZNF558-201ENST00000301475 MROH2BQ7Z745 1585 aa16.43■□□□□ 0.22
ZNF558-201ENST00000301475 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
ZNF558-201ENST00000301475 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
ZNF558-201ENST00000301475 EIF4G1Q04637 1599 aaKnown RBP16.41■□□□□ 0.22
ZNF558-201ENST00000301475 WIZO95785 1651 aa16.39■□□□□ 0.21
ZNF558-201ENST00000301475 CEP162Q5TB80 1403 aa16.34■□□□□ 0.21
ZNF558-201ENST00000301475 MIER1Q8N108 512 aa16.33■□□□□ 0.2
ZNF558-201ENST00000301475 UNC13AQ9UPW8 1703 aa16.3■□□□□ 0.2
ZNF558-201ENST00000301475 BAZ1AQ9NRL2 1556 aaPredicted RBP16.28■□□□□ 0.2
ZNF558-201ENST00000301475 CCDC88BA6NC98 1476 aa16.26■□□□□ 0.19
ZNF558-201ENST00000301475 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
ZNF558-201ENST00000301475 TNIKQ9UKE5 1360 aa16.22■□□□□ 0.19
ZNF558-201ENST00000301475 SOGA1O94964 1423 aa16.19■□□□□ 0.18
ZNF558-201ENST00000301475 BICRAQ9NZM4 1560 aa16.18■□□□□ 0.18
ZNF558-201ENST00000301475 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
ZNF558-201ENST00000301475 HNRNPUL2Q1KMD3 747 aaKnown RBP16.1■□□□□ 0.17
ZNF558-201ENST00000301475 UBTFP17480 764 aaKnown RBP16.07■□□□□ 0.16
ZNF558-201ENST00000301475 SUPT16HQ9Y5B9 1047 aaKnown RBP16.06■□□□□ 0.16
ZNF558-201ENST00000301475 TOP2AP11388 1531 aaKnown RBP16.06■□□□□ 0.16
ZNF558-201ENST00000301475 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
ZNF558-201ENST00000301475 EEA1Q15075 1411 aa16.05■□□□□ 0.16
ZNF558-201ENST00000301475 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
ZNF558-201ENST00000301475 GOLGA3Q08378 1498 aa16.04■□□□□ 0.16
ZNF558-201ENST00000301475 SMARCA2P51531 1590 aa16.03■□□□□ 0.16
ZNF558-201ENST00000301475 CLSPNQ9HAW4 1339 aa15.99■□□□□ 0.15
ZNF558-201ENST00000301475 TSHZ2Q9NRE2 1034 aa15.97■□□□□ 0.15
ZNF558-201ENST00000301475 ANP32EQ9BTT0 268 aa15.92■□□□□ 0.14
ZNF558-201ENST00000301475 CLIP1P30622 1438 aa15.9■□□□□ 0.14
ZNF558-201ENST00000301475 VPS8Q8N3P4 1428 aa15.9■□□□□ 0.14
ZNF558-201ENST00000301475 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
ZNF558-201ENST00000301475 KIF21BO75037 1637 aa15.87■□□□□ 0.13
ZNF558-201ENST00000301475 DHX57Q6P158 1386 aaKnown RBP15.86■□□□□ 0.13
ZNF558-201ENST00000301475 BCL11AQ9H165 835 aa15.84■□□□□ 0.13
ZNF558-201ENST00000301475 ATAD2BQ9ULI0 1458 aa15.82■□□□□ 0.12
ZNF558-201ENST00000301475 SYNJ1O43426 1573 aa15.79■□□□□ 0.12
ZNF558-201ENST00000301475 BAZ1BQ9UIG0 1483 aaKnown RBP15.78■□□□□ 0.12
ZNF558-201ENST00000301475 APLP2Q06481 763 aa15.77■□□□□ 0.12
ZNF558-201ENST00000301475 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
ZNF558-201ENST00000301475 KCNH8Q96L42 1107 aa15.74■□□□□ 0.11
ZNF558-201ENST00000301475 BCANQ96GW7 911 aa15.71■□□□□ 0.11
ZNF558-201ENST00000301475 RANGAP1P46060 587 aaPredicted RBP15.71■□□□□ 0.11
ZNF558-201ENST00000301475 PEG3Q9GZU2 1588 aa15.68■□□□□ 0.1
ZNF558-201ENST00000301475 FKBP8Q14318 412 aa15.63■□□□□ 0.09
ZNF558-201ENST00000301475 KANK4Q5T7N3 995 aaPredicted RBP15.62■□□□□ 0.09
ZNF558-201ENST00000301475 ARAP1Q96P48 1450 aa15.62■□□□□ 0.09
ZNF558-201ENST00000301475 RRBP1Q9P2E9 1410 aaKnown RBP15.61■□□□□ 0.09
ZNF558-201ENST00000301475 CUX2O14529 1486 aa15.61■□□□□ 0.09
ZNF558-201ENST00000301475 RBM19Q9Y4C8 960 aaKnown RBP15.58■□□□□ 0.08
ZNF558-201ENST00000301475 NCAPD3P42695 1498 aa15.56■□□□□ 0.08
ZNF558-201ENST00000301475 MAPKBP1O60336 1514 aa15.55■□□□□ 0.08
ZNF558-201ENST00000301475 CCNB3Q8WWL7 1395 aa15.51■□□□□ 0.07
ZNF558-201ENST00000301475 ERICH3Q5RHP9 1530 aa15.5■□□□□ 0.07
ZNF558-201ENST00000301475 DDX10Q13206 875 aaKnown RBP15.49■□□□□ 0.07
ZNF558-201ENST00000301475 CC2D2AQ9P2K1 1620 aa15.49■□□□□ 0.07
ZNF558-201ENST00000301475 ITGAEP38570 1179 aa15.49■□□□□ 0.07
ZNF558-201ENST00000301475 PRXQ9BXM0 1461 aa15.48■□□□□ 0.07
ZNF558-201ENST00000301475 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
ZNF558-201ENST00000301475 RAB3GAP2Q9H2M9 1393 aa15.48■□□□□ 0.07
ZNF558-201ENST00000301475 WDR97A6NE52 1622 aa15.47■□□□□ 0.07
ZNF558-201ENST00000301475 MSH5O43196 834 aa15.47■□□□□ 0.07
ZNF558-201ENST00000301475 HMGXB3Q12766 1538 aa15.46■□□□□ 0.07
ZNF558-201ENST00000301475 NEFLP07196 543 aa15.46■□□□□ 0.06
ZNF558-201ENST00000301475 DNAJC5BQ9UF47 199 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms