RNA–Protein interactions for RNA: ENST00000298746.4

TRUB1-201, Transcript of TruB pseudouridine synthase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRUB1, Length 3,408 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRUB1-201ENST00000298746 NISCHQ9Y2I1 1504 aa21.22■□□□□ 0.99
TRUB1-201ENST00000298746 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
TRUB1-201ENST00000298746 SUPT5HO00267 1087 aaKnown RBP19.35■□□□□ 0.69
TRUB1-201ENST00000298746 HRCP23327 699 aa18.96■□□□□ 0.63
TRUB1-201ENST00000298746 PCGF6Q9BYE7 350 aa18.95■□□□□ 0.62
TRUB1-201ENST00000298746 PPARGC1BQ86YN6 1023 aaKnown RBP18.76■□□□□ 0.59
TRUB1-201ENST00000298746 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
TRUB1-201ENST00000298746 CHIC1Q5VXU3 224 aa18.6■□□□□ 0.57
TRUB1-201ENST00000298746 MYO15BQ96JP2 1530 aa18.43■□□□□ 0.54
TRUB1-201ENST00000298746 LOC105371045A0A1W2PR82 267 aa18.36■□□□□ 0.53
TRUB1-201ENST00000298746 TRIM26Q12899 539 aaPredicted RBP18.17■□□□□ 0.5
TRUB1-201ENST00000298746 PELP1Q8IZL8 1130 aaKnown RBP18.15■□□□□ 0.5
TRUB1-201ENST00000298746 EHMT2Q96KQ7 1210 aa18.11■□□□□ 0.49
TRUB1-201ENST00000298746 ZEB1P37275 1124 aaPredicted RBP18■□□□□ 0.47
TRUB1-201ENST00000298746 FAM9AQ8IZU1 332 aaPredicted RBP18■□□□□ 0.47
TRUB1-201ENST00000298746 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
TRUB1-201ENST00000298746 ZCCHC6Q5VYS8 1495 aaKnown RBP17.94■□□□□ 0.46
TRUB1-201ENST00000298746 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
TRUB1-201ENST00000298746 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
TRUB1-201ENST00000298746 CCER1Q8TC90 406 aaPredicted RBP17.66■□□□□ 0.42
TRUB1-201ENST00000298746 CCDC180Q9P1Z9 1646 aa17.64■□□□□ 0.41
TRUB1-201ENST00000298746 TTBK1Q5TCY1 1321 aaPredicted RBP17.62■□□□□ 0.41
TRUB1-201ENST00000298746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
TRUB1-201ENST00000298746 CENPBP07199 599 aaPredicted RBP17.57■□□□□ 0.4
TRUB1-201ENST00000298746 ACIN1Q9UKV3 1341 aaKnown RBP17.54■□□□□ 0.4
TRUB1-201ENST00000298746 GTF3C3Q9Y5Q9 886 aa17.53■□□□□ 0.4
TRUB1-201ENST00000298746 NEUROD1Q13562 356 aa17.52■□□□□ 0.4
TRUB1-201ENST00000298746 DIEXFQ68CQ4 756 aaKnown RBP17.46■□□□□ 0.38
TRUB1-201ENST00000298746 YTHDC1Q96MU7 727 aaKnown RBP17.44■□□□□ 0.38
TRUB1-201ENST00000298746 MYT1Q01538 1121 aa17.4■□□□□ 0.38
TRUB1-201ENST00000298746 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.33
TRUB1-201ENST00000298746 ZNF316A6NFI3 1004 aaPredicted RBP17.07■□□□□ 0.32
TRUB1-201ENST00000298746 UBTFP17480 764 aaKnown RBP17.05■□□□□ 0.32
TRUB1-201ENST00000298746 SCRIBQ14160 1630 aa17.01■□□□□ 0.31
TRUB1-201ENST00000298746 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
TRUB1-201ENST00000298746 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
TRUB1-201ENST00000298746 ABCC9O60706 1549 aa16.98■□□□□ 0.31
TRUB1-201ENST00000298746 MIER1Q8N108 512 aa16.95■□□□□ 0.3
TRUB1-201ENST00000298746 RANGAP1P46060 587 aaPredicted RBP16.91■□□□□ 0.3
TRUB1-201ENST00000298746 APLP2Q06481 763 aa16.86■□□□□ 0.29
TRUB1-201ENST00000298746 CECR2Q9BXF3 1484 aa16.75■□□□□ 0.27
TRUB1-201ENST00000298746 CEP162Q5TB80 1403 aa16.73■□□□□ 0.27
TRUB1-201ENST00000298746 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
TRUB1-201ENST00000298746 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
TRUB1-201ENST00000298746 BCANQ96GW7 911 aa16.62■□□□□ 0.25
TRUB1-201ENST00000298746 SOGA1O94964 1423 aa16.58■□□□□ 0.24
TRUB1-201ENST00000298746 SUPT16HQ9Y5B9 1047 aaKnown RBP16.58■□□□□ 0.24
TRUB1-201ENST00000298746 CCDC88BA6NC98 1476 aa16.57■□□□□ 0.24
TRUB1-201ENST00000298746 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
TRUB1-201ENST00000298746 ABCC8Q09428 1581 aa16.55■□□□□ 0.24
TRUB1-201ENST00000298746 WIZO95785 1651 aa16.55■□□□□ 0.24
TRUB1-201ENST00000298746 WRNQ14191 1432 aaPredicted RBP eCLIP16.54■□□□□ 0.24
TRUB1-201ENST00000298746 ITGAEP38570 1179 aa16.52■□□□□ 0.24
TRUB1-201ENST00000298746 ANP32EQ9BTT0 268 aa16.46■□□□□ 0.23
TRUB1-201ENST00000298746 CLSPNQ9HAW4 1339 aa16.44■□□□□ 0.22
TRUB1-201ENST00000298746 TSHZ2Q9NRE2 1034 aa16.44■□□□□ 0.22
TRUB1-201ENST00000298746 NEFLP07196 543 aa16.43■□□□□ 0.22
TRUB1-201ENST00000298746 RUSC2Q8N2Y8 1516 aa16.42■□□□□ 0.22
TRUB1-201ENST00000298746 GOLGA3Q08378 1498 aa16.4■□□□□ 0.22
TRUB1-201ENST00000298746 FKBP8Q14318 412 aa16.39■□□□□ 0.21
TRUB1-201ENST00000298746 CLIP1P30622 1438 aa16.38■□□□□ 0.21
TRUB1-201ENST00000298746 EEA1Q15075 1411 aa16.34■□□□□ 0.21
TRUB1-201ENST00000298746 BCL11AQ9H165 835 aa16.34■□□□□ 0.21
TRUB1-201ENST00000298746 KCNH8Q96L42 1107 aa16.31■□□□□ 0.2
TRUB1-201ENST00000298746 ERICH6Q7L0X2 663 aa16.3■□□□□ 0.2
TRUB1-201ENST00000298746 BAZ1AQ9NRL2 1556 aaPredicted RBP16.29■□□□□ 0.2
TRUB1-201ENST00000298746 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
TRUB1-201ENST00000298746 TRIM52Q96A61 297 aa16.24■□□□□ 0.19
TRUB1-201ENST00000298746 NACADO15069 1562 aa16.23■□□□□ 0.19
TRUB1-201ENST00000298746 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
TRUB1-201ENST00000298746 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
TRUB1-201ENST00000298746 VPS8Q8N3P4 1428 aa16.22■□□□□ 0.19
TRUB1-201ENST00000298746 HIRIP3Q9BW71 556 aaPredicted RBP16.2■□□□□ 0.18
TRUB1-201ENST00000298746 ATP1B4Q9UN42 357 aaPredicted RBP16.19■□□□□ 0.18
TRUB1-201ENST00000298746 DHX57Q6P158 1386 aaKnown RBP16.19■□□□□ 0.18
TRUB1-201ENST00000298746 TOP2AP11388 1531 aaKnown RBP16.16■□□□□ 0.18
TRUB1-201ENST00000298746 KANK4Q5T7N3 995 aaPredicted RBP16.16■□□□□ 0.18
TRUB1-201ENST00000298746 RBM19Q9Y4C8 960 aaKnown RBP16.15■□□□□ 0.18
TRUB1-201ENST00000298746 ANP32CO43423 234 aa16.12■□□□□ 0.17
TRUB1-201ENST00000298746 FAM50AQ14320 339 aaKnown RBP16.11■□□□□ 0.17
TRUB1-201ENST00000298746 SMARCA2P51531 1590 aa16.1■□□□□ 0.17
TRUB1-201ENST00000298746 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
TRUB1-201ENST00000298746 RAPGEF2Q9Y4G8 1499 aa16.08■□□□□ 0.17
TRUB1-201ENST00000298746 IRX6P78412 446 aaPredicted RBP16.08■□□□□ 0.16
TRUB1-201ENST00000298746 SIN3AQ96ST3 1273 aa16.06■□□□□ 0.16
TRUB1-201ENST00000298746 CDK11AQ9UQ88 783 aaPredicted RBP16.03■□□□□ 0.16
TRUB1-201ENST00000298746 SMARCA4P51532 1647 aa16■□□□□ 0.15
TRUB1-201ENST00000298746 HNRNPUQ00839 825 aaKnown RBP eCLIP15.98■□□□□ 0.15
TRUB1-201ENST00000298746 CCNB3Q8WWL7 1395 aa15.98■□□□□ 0.15
TRUB1-201ENST00000298746 KIF21BO75037 1637 aa15.96■□□□□ 0.15
TRUB1-201ENST00000298746 RAB3GAP2Q9H2M9 1393 aa15.93■□□□□ 0.14
TRUB1-201ENST00000298746 P3H3Q8IVL6 736 aa15.92■□□□□ 0.14
TRUB1-201ENST00000298746 BAZ1BQ9UIG0 1483 aaKnown RBP15.91■□□□□ 0.14
TRUB1-201ENST00000298746 SYNJ1O43426 1573 aa15.9■□□□□ 0.14
TRUB1-201ENST00000298746 CNGB1Q14028 1251 aaPredicted RBP15.89■□□□□ 0.13
TRUB1-201ENST00000298746 MSH5O43196 834 aa15.84■□□□□ 0.13
TRUB1-201ENST00000298746 CCER2I3L3R5 266 aa15.84■□□□□ 0.13
TRUB1-201ENST00000298746 TONSLQ96HA7 1378 aa15.83■□□□□ 0.12
TRUB1-201ENST00000298746 NBR1Q14596 966 aa15.82■□□□□ 0.12
TRUB1-201ENST00000298746 PPP1R15AO75807 674 aaPredicted RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms