RNA–Protein interactions for RNA: ENST00000256362.4

VRTN-201, Transcript of vertebrae development associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRTN, Length 3,466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRTN-201ENST00000256362 NISCHQ9Y2I1 1504 aa22.71■■□□□ 1.23
VRTN-201ENST00000256362 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
VRTN-201ENST00000256362 SUPT5HO00267 1087 aaKnown RBP20.03■□□□□ 0.8
VRTN-201ENST00000256362 DCAF8L2P0C7V8 631 aa19.7■□□□□ 0.74
VRTN-201ENST00000256362 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
VRTN-201ENST00000256362 PPARGC1BQ86YN6 1023 aaKnown RBP19.39■□□□□ 0.7
VRTN-201ENST00000256362 CCDC180Q9P1Z9 1646 aa19.39■□□□□ 0.69
VRTN-201ENST00000256362 HRCP23327 699 aa19.28■□□□□ 0.68
VRTN-201ENST00000256362 CHIC1Q5VXU3 224 aa19.21■□□□□ 0.67
VRTN-201ENST00000256362 ZCCHC6Q5VYS8 1495 aaKnown RBP19.19■□□□□ 0.66
VRTN-201ENST00000256362 MYO15BQ96JP2 1530 aa19.19■□□□□ 0.66
VRTN-201ENST00000256362 LOC105371045A0A1W2PR82 267 aa18.97■□□□□ 0.63
VRTN-201ENST00000256362 EHMT2Q96KQ7 1210 aa18.79■□□□□ 0.6
VRTN-201ENST00000256362 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
VRTN-201ENST00000256362 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
VRTN-201ENST00000256362 PELP1Q8IZL8 1130 aaKnown RBP18.58■□□□□ 0.56
VRTN-201ENST00000256362 TRIM26Q12899 539 aaPredicted RBP18.42■□□□□ 0.54
VRTN-201ENST00000256362 SCAF1Q9H7N4 1312 aaKnown RBP18.41■□□□□ 0.54
VRTN-201ENST00000256362 TRIM41Q8WV44 630 aa18.4■□□□□ 0.54
VRTN-201ENST00000256362 SCRIBQ14160 1630 aa18.25■□□□□ 0.51
VRTN-201ENST00000256362 TTBK1Q5TCY1 1321 aaPredicted RBP18.23■□□□□ 0.51
VRTN-201ENST00000256362 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
VRTN-201ENST00000256362 YTHDC1Q96MU7 727 aaKnown RBP18.1■□□□□ 0.49
VRTN-201ENST00000256362 ZEB1P37275 1124 aaPredicted RBP18.09■□□□□ 0.49
VRTN-201ENST00000256362 ABCC9O60706 1549 aa18.09■□□□□ 0.49
VRTN-201ENST00000256362 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
VRTN-201ENST00000256362 GTF3C3Q9Y5Q9 886 aa18.06■□□□□ 0.48
VRTN-201ENST00000256362 CCER1Q8TC90 406 aaPredicted RBP18■□□□□ 0.47
VRTN-201ENST00000256362 NEUROD1Q13562 356 aa18■□□□□ 0.47
VRTN-201ENST00000256362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.99■□□□□ 0.47
VRTN-201ENST00000256362 CENPBP07199 599 aaPredicted RBP17.93■□□□□ 0.46
VRTN-201ENST00000256362 NACADO15069 1562 aa17.93■□□□□ 0.46
VRTN-201ENST00000256362 CECR2Q9BXF3 1484 aa17.93■□□□□ 0.46
VRTN-201ENST00000256362 ACIN1Q9UKV3 1341 aaKnown RBP17.92■□□□□ 0.46
VRTN-201ENST00000256362 DIEXFQ68CQ4 756 aaKnown RBP17.79■□□□□ 0.44
VRTN-201ENST00000256362 MYT1Q01538 1121 aa17.78■□□□□ 0.44
VRTN-201ENST00000256362 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
VRTN-201ENST00000256362 WIZO95785 1651 aa17.71■□□□□ 0.43
VRTN-201ENST00000256362 UBTFP17480 764 aaKnown RBP17.62■□□□□ 0.41
VRTN-201ENST00000256362 RANGAP1P46060 587 aaPredicted RBP17.62■□□□□ 0.41
VRTN-201ENST00000256362 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
VRTN-201ENST00000256362 CCDC88BA6NC98 1476 aa17.49■□□□□ 0.39
VRTN-201ENST00000256362 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
VRTN-201ENST00000256362 HNRNPUL2Q1KMD3 747 aaKnown RBP17.47■□□□□ 0.39
VRTN-201ENST00000256362 UNC13AQ9UPW8 1703 aa17.47■□□□□ 0.39
VRTN-201ENST00000256362 SOGA1O94964 1423 aa17.46■□□□□ 0.39
VRTN-201ENST00000256362 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
VRTN-201ENST00000256362 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
VRTN-201ENST00000256362 RUSC2Q8N2Y8 1516 aa17.39■□□□□ 0.37
VRTN-201ENST00000256362 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
VRTN-201ENST00000256362 SMARCA4P51532 1647 aa17.33■□□□□ 0.37
VRTN-201ENST00000256362 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
VRTN-201ENST00000256362 MIER1Q8N108 512 aa17.3■□□□□ 0.36
VRTN-201ENST00000256362 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.36
VRTN-201ENST00000256362 ZNF316A6NFI3 1004 aaPredicted RBP17.27■□□□□ 0.35
VRTN-201ENST00000256362 BCANQ96GW7 911 aa17.26■□□□□ 0.35
VRTN-201ENST00000256362 BICRAQ9NZM4 1560 aa17.24■□□□□ 0.35
VRTN-201ENST00000256362 TNIKQ9UKE5 1360 aa17.21■□□□□ 0.35
VRTN-201ENST00000256362 APLP2Q06481 763 aa17.2■□□□□ 0.34
VRTN-201ENST00000256362 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
VRTN-201ENST00000256362 WRNQ14191 1432 aaPredicted RBP eCLIP17.15■□□□□ 0.34
VRTN-201ENST00000256362 GOLGA3Q08378 1498 aa17.09■□□□□ 0.33
VRTN-201ENST00000256362 ITGAEP38570 1179 aa17.06■□□□□ 0.32
VRTN-201ENST00000256362 CLIP1P30622 1438 aa17.05■□□□□ 0.32
VRTN-201ENST00000256362 BCL11AQ9H165 835 aa17.03■□□□□ 0.32
VRTN-201ENST00000256362 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.31
VRTN-201ENST00000256362 EEA1Q15075 1411 aa16.99■□□□□ 0.31
VRTN-201ENST00000256362 RAPGEF2Q9Y4G8 1499 aa16.95■□□□□ 0.3
VRTN-201ENST00000256362 SYNJ1O43426 1573 aa16.95■□□□□ 0.3
VRTN-201ENST00000256362 CEP164Q9UPV0 1460 aa16.94■□□□□ 0.3
VRTN-201ENST00000256362 SUPT16HQ9Y5B9 1047 aaKnown RBP16.92■□□□□ 0.3
VRTN-201ENST00000256362 ANP32EQ9BTT0 268 aa16.91■□□□□ 0.3
VRTN-201ENST00000256362 ATAD2BQ9ULI0 1458 aa16.9■□□□□ 0.3
VRTN-201ENST00000256362 KANK4Q5T7N3 995 aaPredicted RBP16.89■□□□□ 0.29
VRTN-201ENST00000256362 VPS8Q8N3P4 1428 aa16.88■□□□□ 0.29
VRTN-201ENST00000256362 ERICH6Q7L0X2 663 aa16.86■□□□□ 0.29
VRTN-201ENST00000256362 TSHZ2Q9NRE2 1034 aa16.83■□□□□ 0.29
VRTN-201ENST00000256362 BAZ1BQ9UIG0 1483 aaKnown RBP16.83■□□□□ 0.29
VRTN-201ENST00000256362 FKBP8Q14318 412 aa16.82■□□□□ 0.28
VRTN-201ENST00000256362 ATP1B4Q9UN42 357 aaPredicted RBP16.8■□□□□ 0.28
VRTN-201ENST00000256362 NEFLP07196 543 aa16.79■□□□□ 0.28
VRTN-201ENST00000256362 KIF21BO75037 1637 aa16.76■□□□□ 0.27
VRTN-201ENST00000256362 KCNH8Q96L42 1107 aa16.72■□□□□ 0.27
VRTN-201ENST00000256362 DHX57Q6P158 1386 aaKnown RBP16.72■□□□□ 0.27
VRTN-201ENST00000256362 P3H3Q8IVL6 736 aa16.71■□□□□ 0.27
VRTN-201ENST00000256362 HIRIP3Q9BW71 556 aaPredicted RBP16.69■□□□□ 0.26
VRTN-201ENST00000256362 TRIM52Q96A61 297 aa16.66■□□□□ 0.26
VRTN-201ENST00000256362 FAM50AQ14320 339 aaKnown RBP16.65■□□□□ 0.26
VRTN-201ENST00000256362 ARAP1Q96P48 1450 aa16.63■□□□□ 0.25
VRTN-201ENST00000256362 IRX6P78412 446 aaPredicted RBP16.62■□□□□ 0.25
VRTN-201ENST00000256362 SIN3AQ96ST3 1273 aa16.6■□□□□ 0.25
VRTN-201ENST00000256362 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
VRTN-201ENST00000256362 HMGXB3Q12766 1538 aa16.59■□□□□ 0.25
VRTN-201ENST00000256362 DDX10Q13206 875 aaKnown RBP16.59■□□□□ 0.25
VRTN-201ENST00000256362 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
VRTN-201ENST00000256362 CCNB3Q8WWL7 1395 aa16.55■□□□□ 0.24
VRTN-201ENST00000256362 RBM19Q9Y4C8 960 aaKnown RBP16.54■□□□□ 0.24
VRTN-201ENST00000256362 CNGB1Q14028 1251 aaPredicted RBP16.53■□□□□ 0.24
VRTN-201ENST00000256362 BIVM-ERCC5R4GMW8 1640 aa16.53■□□□□ 0.24
VRTN-201ENST00000256362 KIF27Q86VH2 1401 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms