RNA–Protein interactions for RNA: ENST00000220509.9

VPS18-201, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS18, Length 3,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-201ENST00000220509 NISCHQ9Y2I1 1504 aa20.52■□□□□ 0.88
VPS18-201ENST00000220509 DCAF8L2P0C7V8 631 aa18.7■□□□□ 0.58
VPS18-201ENST00000220509 SHROOM4Q9ULL8 1493 aa18.23■□□□□ 0.51
VPS18-201ENST00000220509 PELP1Q8IZL8 1130 aaKnown RBP18.18■□□□□ 0.5
VPS18-201ENST00000220509 SUPT5HO00267 1087 aaKnown RBP17.97■□□□□ 0.47
VPS18-201ENST00000220509 MYT1Q01538 1121 aa17.96■□□□□ 0.47
VPS18-201ENST00000220509 ABCC9O60706 1549 aa17.3■□□□□ 0.36
VPS18-201ENST00000220509 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
VPS18-201ENST00000220509 TTBK1Q5TCY1 1321 aaPredicted RBP17.16■□□□□ 0.34
VPS18-201ENST00000220509 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
VPS18-201ENST00000220509 ZCCHC6Q5VYS8 1495 aaKnown RBP17.13■□□□□ 0.33
VPS18-201ENST00000220509 PRKCSHP14314 528 aaPredicted RBP17.12■□□□□ 0.33
VPS18-201ENST00000220509 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
VPS18-201ENST00000220509 PPARGC1BQ86YN6 1023 aaKnown RBP17.04■□□□□ 0.32
VPS18-201ENST00000220509 HRCP23327 699 aa17■□□□□ 0.31
VPS18-201ENST00000220509 SLC24A1O60721 1099 aa16.92■□□□□ 0.3
VPS18-201ENST00000220509 ERICH6Q7L0X2 663 aa16.83■□□□□ 0.29
VPS18-201ENST00000220509 FAM9AQ8IZU1 332 aaPredicted RBP16.82■□□□□ 0.28
VPS18-201ENST00000220509 PABPN1Q86U42 306 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS18-201ENST00000220509 SCRIBQ14160 1630 aa16.73■□□□□ 0.27
VPS18-201ENST00000220509 BCL11AQ9H165 835 aa16.61■□□□□ 0.25
VPS18-201ENST00000220509 CHIC1Q5VXU3 224 aa16.59■□□□□ 0.25
VPS18-201ENST00000220509 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
VPS18-201ENST00000220509 LOC105371045A0A1W2PR82 267 aa16.45■□□□□ 0.22
VPS18-201ENST00000220509 DCAF1Q9Y4B6 1507 aa16.43■□□□□ 0.22
VPS18-201ENST00000220509 APLP2Q06481 763 aa16.42■□□□□ 0.22
VPS18-201ENST00000220509 SCAF1Q9H7N4 1312 aaKnown RBP16.33■□□□□ 0.21
VPS18-201ENST00000220509 NACADO15069 1562 aa16.32■□□□□ 0.2
VPS18-201ENST00000220509 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
VPS18-201ENST00000220509 CECR2Q9BXF3 1484 aa16.26■□□□□ 0.19
VPS18-201ENST00000220509 RANGAP1P46060 587 aaPredicted RBP16.24■□□□□ 0.19
VPS18-201ENST00000220509 RSF1Q96T23 1441 aaPredicted RBP16.24■□□□□ 0.19
VPS18-201ENST00000220509 MYO15BQ96JP2 1530 aa16.24■□□□□ 0.19
VPS18-201ENST00000220509 TRIM26Q12899 539 aaPredicted RBP16.19■□□□□ 0.18
VPS18-201ENST00000220509 UBTFP17480 764 aaKnown RBP16.14■□□□□ 0.17
VPS18-201ENST00000220509 CENPBP07199 599 aaPredicted RBP16.06■□□□□ 0.16
VPS18-201ENST00000220509 ZEB1P37275 1124 aaPredicted RBP16.04■□□□□ 0.16
VPS18-201ENST00000220509 MROH2BQ7Z745 1585 aa16.03■□□□□ 0.16
VPS18-201ENST00000220509 EIF5BO60841 1220 aaKnown RBP15.96■□□□□ 0.15
VPS18-201ENST00000220509 YTHDC1Q96MU7 727 aaKnown RBP15.96■□□□□ 0.15
VPS18-201ENST00000220509 DAXXQ9UER7 740 aaPredicted RBP15.96■□□□□ 0.15
VPS18-201ENST00000220509 CCER1Q8TC90 406 aaPredicted RBP15.95■□□□□ 0.14
VPS18-201ENST00000220509 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
VPS18-201ENST00000220509 WIZO95785 1651 aa15.87■□□□□ 0.13
VPS18-201ENST00000220509 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
VPS18-201ENST00000220509 NEUROD1Q13562 356 aa15.84■□□□□ 0.13
VPS18-201ENST00000220509 BAZ1AQ9NRL2 1556 aaPredicted RBP15.84■□□□□ 0.13
VPS18-201ENST00000220509 ATP1B4Q9UN42 357 aaPredicted RBP15.8■□□□□ 0.12
VPS18-201ENST00000220509 ACIN1Q9UKV3 1341 aaKnown RBP15.8■□□□□ 0.12
VPS18-201ENST00000220509 DIEXFQ68CQ4 756 aaKnown RBP15.72■□□□□ 0.11
VPS18-201ENST00000220509 CCDC88BA6NC98 1476 aa15.67■□□□□ 0.1
VPS18-201ENST00000220509 BAZ1BQ9UIG0 1483 aaKnown RBP15.67■□□□□ 0.1
VPS18-201ENST00000220509 PLEKHG5O94827 1062 aa15.67■□□□□ 0.1
VPS18-201ENST00000220509 SMARCA4P51532 1647 aa15.63■□□□□ 0.09
VPS18-201ENST00000220509 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
VPS18-201ENST00000220509 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
VPS18-201ENST00000220509 ABCC8Q09428 1581 aa15.59■□□□□ 0.09
VPS18-201ENST00000220509 ITGAEP38570 1179 aa15.56■□□□□ 0.08
VPS18-201ENST00000220509 BICRAQ9NZM4 1560 aa15.55■□□□□ 0.08
VPS18-201ENST00000220509 UNC13AQ9UPW8 1703 aa15.55■□□□□ 0.08
VPS18-201ENST00000220509 ANP32EQ9BTT0 268 aa15.54■□□□□ 0.08
VPS18-201ENST00000220509 ATAD2BQ9ULI0 1458 aa15.53■□□□□ 0.08
VPS18-201ENST00000220509 TOP2AP11388 1531 aaKnown RBP15.52■□□□□ 0.07
VPS18-201ENST00000220509 WRNQ14191 1432 aaPredicted RBP eCLIP15.48■□□□□ 0.07
VPS18-201ENST00000220509 SOGA1O94964 1423 aa15.47■□□□□ 0.07
VPS18-201ENST00000220509 ANO8Q9HCE9 1232 aaPredicted RBP15.46■□□□□ 0.07
VPS18-201ENST00000220509 DNAJC5BQ9UF47 199 aa15.42■□□□□ 0.06
VPS18-201ENST00000220509 PODXL2Q9NZ53 605 aa15.41■□□□□ 0.06
VPS18-201ENST00000220509 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
VPS18-201ENST00000220509 P3H3Q8IVL6 736 aa15.38■□□□□ 0.05
VPS18-201ENST00000220509 EIF4G1Q04637 1599 aaKnown RBP15.33■□□□□ 0.05
VPS18-201ENST00000220509 RUSC2Q8N2Y8 1516 aa15.33■□□□□ 0.05
VPS18-201ENST00000220509 ZNF316A6NFI3 1004 aaPredicted RBP15.26■□□□□ 0.03
VPS18-201ENST00000220509 MIER1Q8N108 512 aa15.25■□□□□ 0.03
VPS18-201ENST00000220509 FBLN2P98095 1184 aa15.23■□□□□ 0.03
VPS18-201ENST00000220509 UBE2Q2Q8WVN8 375 aa15.23■□□□□ 0.03
VPS18-201ENST00000220509 BCANQ96GW7 911 aa15.22■□□□□ 0.03
VPS18-201ENST00000220509 CCDC136Q96JN2 1154 aa15.22■□□□□ 0.03
VPS18-201ENST00000220509 CEP162Q5TB80 1403 aa15.22■□□□□ 0.03
VPS18-201ENST00000220509 FAM50AQ14320 339 aaKnown RBP15.21■□□□□ 0.03
VPS18-201ENST00000220509 ARID3CA6NKF2 412 aa15.2■□□□□ 0.02
VPS18-201ENST00000220509 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
VPS18-201ENST00000220509 PKNOX2Q96KN3 472 aa15.18■□□□□ 0.02
VPS18-201ENST00000220509 CADPSQ9ULU8 1353 aa15.17■□□□□ 0.02
VPS18-201ENST00000220509 GOLGA3Q08378 1498 aa15.14■□□□□ 0.01
VPS18-201ENST00000220509 CLIP1P30622 1438 aa15.14■□□□□ 0.01
VPS18-201ENST00000220509 EEA1Q15075 1411 aa15.12■□□□□ 0.01
VPS18-201ENST00000220509 TNIKQ9UKE5 1360 aa15.11■□□□□ 0.01
VPS18-201ENST00000220509 CC2D2AQ9P2K1 1620 aa15.11■□□□□ 0.01
VPS18-201ENST00000220509 KIF27Q86VH2 1401 aa15.1■□□□□ 0.01
VPS18-201ENST00000220509 CUX2O14529 1486 aa15.09■□□□□ 0.01
VPS18-201ENST00000220509 NESP48681 1621 aa15.07■□□□□ 0
VPS18-201ENST00000220509 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
VPS18-201ENST00000220509 SYNJ1O43426 1573 aa15.07■□□□□ 0
VPS18-201ENST00000220509 RAPGEF2Q9Y4G8 1499 aa15.04■□□□□ -0
VPS18-201ENST00000220509 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
VPS18-201ENST00000220509 SALL2Q9Y467 1007 aaPredicted RBP15.03■□□□□ -0
VPS18-201ENST00000220509 PEG3Q9GZU2 1588 aa15.01□□□□□ -0.01
VPS18-201ENST00000220509 FANCD2Q9BXW9 1451 aa15□□□□□ -0.01
VPS18-201ENST00000220509 CARMIL1Q5VZK9 1371 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms