RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NISCHQ9Y2I1 1504 aa21.81■■□□□ 1.08
USP28-201ENST00000003302 SHROOM4Q9ULL8 1493 aa19.3■□□□□ 0.68
USP28-201ENST00000003302 SUPT5HO00267 1087 aaKnown RBP18.9■□□□□ 0.62
USP28-201ENST00000003302 DCAF8L2P0C7V8 631 aa18.56■□□□□ 0.56
USP28-201ENST00000003302 MYO15BQ96JP2 1530 aa18.46■□□□□ 0.55
USP28-201ENST00000003302 ZCCHC6Q5VYS8 1495 aaKnown RBP18.45■□□□□ 0.54
USP28-201ENST00000003302 CCDC180Q9P1Z9 1646 aa18.36■□□□□ 0.53
USP28-201ENST00000003302 CHIC1Q5VXU3 224 aa18.27■□□□□ 0.52
USP28-201ENST00000003302 LOC105371045A0A1W2PR82 267 aa18.03■□□□□ 0.48
USP28-201ENST00000003302 PCGF6Q9BYE7 350 aa18.01■□□□□ 0.47
USP28-201ENST00000003302 PPARGC1BQ86YN6 1023 aaKnown RBP17.98■□□□□ 0.47
USP28-201ENST00000003302 HRCP23327 699 aa17.87■□□□□ 0.45
USP28-201ENST00000003302 EHMT2Q96KQ7 1210 aa17.68■□□□□ 0.42
USP28-201ENST00000003302 DCAF1Q9Y4B6 1507 aa17.56■□□□□ 0.4
USP28-201ENST00000003302 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
USP28-201ENST00000003302 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
USP28-201ENST00000003302 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
USP28-201ENST00000003302 ABCC9O60706 1549 aa17.43■□□□□ 0.38
USP28-201ENST00000003302 RB1CC1Q8TDY2 1594 aa17.41■□□□□ 0.38
USP28-201ENST00000003302 CECR2Q9BXF3 1484 aa17.33■□□□□ 0.36
USP28-201ENST00000003302 TRIM41Q8WV44 630 aa17.32■□□□□ 0.36
USP28-201ENST00000003302 TRIM26Q12899 539 aaPredicted RBP17.27■□□□□ 0.36
USP28-201ENST00000003302 MROH2BQ7Z745 1585 aa17.17■□□□□ 0.34
USP28-201ENST00000003302 WIZO95785 1651 aa17.11■□□□□ 0.33
USP28-201ENST00000003302 TTBK1Q5TCY1 1321 aaPredicted RBP17.08■□□□□ 0.32
USP28-201ENST00000003302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.94■□□□□ 0.3
USP28-201ENST00000003302 NACADO15069 1562 aa16.93■□□□□ 0.3
USP28-201ENST00000003302 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
USP28-201ENST00000003302 UNC13AQ9UPW8 1703 aa16.84■□□□□ 0.29
USP28-201ENST00000003302 CCDC88BA6NC98 1476 aa16.82■□□□□ 0.28
USP28-201ENST00000003302 SCAF1Q9H7N4 1312 aaKnown RBP16.79■□□□□ 0.28
USP28-201ENST00000003302 EIF4G1Q04637 1599 aaKnown RBP16.78■□□□□ 0.28
USP28-201ENST00000003302 RUSC2Q8N2Y8 1516 aa16.77■□□□□ 0.27
USP28-201ENST00000003302 PABPN1Q86U42 306 aaKnown RBP eCLIP16.75■□□□□ 0.27
USP28-201ENST00000003302 SOGA1O94964 1423 aa16.75■□□□□ 0.27
USP28-201ENST00000003302 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
USP28-201ENST00000003302 CCER1Q8TC90 406 aaPredicted RBP16.66■□□□□ 0.26
USP28-201ENST00000003302 ZEB1P37275 1124 aaPredicted RBP16.64■□□□□ 0.25
USP28-201ENST00000003302 SMARCA2P51531 1590 aa16.6■□□□□ 0.25
USP28-201ENST00000003302 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
USP28-201ENST00000003302 CEP162Q5TB80 1403 aa16.56■□□□□ 0.24
USP28-201ENST00000003302 RANGAP1P46060 587 aaPredicted RBP16.56■□□□□ 0.24
USP28-201ENST00000003302 TOP2AP11388 1531 aaKnown RBP16.55■□□□□ 0.24
USP28-201ENST00000003302 NEUROD1Q13562 356 aa16.54■□□□□ 0.24
USP28-201ENST00000003302 BICRAQ9NZM4 1560 aa16.53■□□□□ 0.24
USP28-201ENST00000003302 UBTFP17480 764 aaKnown RBP16.52■□□□□ 0.24
USP28-201ENST00000003302 CSRNP3Q8WYN3 585 aa16.46■□□□□ 0.22
USP28-201ENST00000003302 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
USP28-201ENST00000003302 DIEXFQ68CQ4 756 aaKnown RBP16.41■□□□□ 0.22
USP28-201ENST00000003302 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
USP28-201ENST00000003302 SYNJ1O43426 1573 aa16.36■□□□□ 0.21
USP28-201ENST00000003302 TNIKQ9UKE5 1360 aa16.36■□□□□ 0.21
USP28-201ENST00000003302 ACIN1Q9UKV3 1341 aaKnown RBP16.33■□□□□ 0.21
USP28-201ENST00000003302 YTHDC1Q96MU7 727 aaKnown RBP16.31■□□□□ 0.2
USP28-201ENST00000003302 GTF3C3Q9Y5Q9 886 aa16.31■□□□□ 0.2
USP28-201ENST00000003302 RAPGEF2Q9Y4G8 1499 aa16.26■□□□□ 0.19
USP28-201ENST00000003302 GOLGA3Q08378 1498 aa16.22■□□□□ 0.19
USP28-201ENST00000003302 MIER1Q8N108 512 aa16.2■□□□□ 0.18
USP28-201ENST00000003302 CLIP1P30622 1438 aa16.17■□□□□ 0.18
USP28-201ENST00000003302 ATAD2BQ9ULI0 1458 aa16.17■□□□□ 0.18
USP28-201ENST00000003302 ZNF316A6NFI3 1004 aaPredicted RBP16.14■□□□□ 0.17
USP28-201ENST00000003302 KANK4Q5T7N3 995 aaPredicted RBP16.13■□□□□ 0.17
USP28-201ENST00000003302 PEG3Q9GZU2 1588 aa16.13■□□□□ 0.17
USP28-201ENST00000003302 EEA1Q15075 1411 aa16.1■□□□□ 0.17
USP28-201ENST00000003302 BAZ1BQ9UIG0 1483 aaKnown RBP16.09■□□□□ 0.17
USP28-201ENST00000003302 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
USP28-201ENST00000003302 KIF21BO75037 1637 aa16.07■□□□□ 0.16
USP28-201ENST00000003302 VPS8Q8N3P4 1428 aa16.06■□□□□ 0.16
USP28-201ENST00000003302 ITGAEP38570 1179 aa16■□□□□ 0.15
USP28-201ENST00000003302 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
USP28-201ENST00000003302 CENPBP07199 599 aaPredicted RBP15.95■□□□□ 0.14
USP28-201ENST00000003302 TOP2BQ02880 1626 aa15.93■□□□□ 0.14
USP28-201ENST00000003302 APLP2Q06481 763 aa15.92■□□□□ 0.14
USP28-201ENST00000003302 CUX1P39880 1505 aa15.92■□□□□ 0.14
USP28-201ENST00000003302 KCNH8Q96L42 1107 aa15.91■□□□□ 0.14
USP28-201ENST00000003302 DHX57Q6P158 1386 aaKnown RBP15.91■□□□□ 0.14
USP28-201ENST00000003302 PRXQ9BXM0 1461 aa15.88■□□□□ 0.13
USP28-201ENST00000003302 P3H3Q8IVL6 736 aa15.83■□□□□ 0.12
USP28-201ENST00000003302 PELP1Q8IZL8 1130 aaKnown RBP15.82■□□□□ 0.12
USP28-201ENST00000003302 BIVM-ERCC5R4GMW8 1640 aa15.81■□□□□ 0.12
USP28-201ENST00000003302 ARHGAP35Q9NRY4 1499 aa15.8■□□□□ 0.12
USP28-201ENST00000003302 HIRIP3Q9BW71 556 aaPredicted RBP15.78■□□□□ 0.12
USP28-201ENST00000003302 SIN3AQ96ST3 1273 aa15.73■□□□□ 0.11
USP28-201ENST00000003302 HMGXB3Q12766 1538 aa15.7■□□□□ 0.1
USP28-201ENST00000003302 ERICH3Q5RHP9 1530 aa15.7■□□□□ 0.1
USP28-201ENST00000003302 KIF27Q86VH2 1401 aa15.69■□□□□ 0.1
USP28-201ENST00000003302 ATP1B4Q9UN42 357 aaPredicted RBP15.69■□□□□ 0.1
USP28-201ENST00000003302 IGF1RP08069 1367 aa15.69■□□□□ 0.1
USP28-201ENST00000003302 NCAPD3P42695 1498 aa15.69■□□□□ 0.1
USP28-201ENST00000003302 RRBP1Q9P2E9 1410 aaKnown RBP15.68■□□□□ 0.1
USP28-201ENST00000003302 CUX2O14529 1486 aa15.68■□□□□ 0.1
USP28-201ENST00000003302 CFTRP13569 1480 aa15.68■□□□□ 0.1
USP28-201ENST00000003302 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
USP28-201ENST00000003302 RAB3GAP2Q9H2M9 1393 aa15.67■□□□□ 0.1
USP28-201ENST00000003302 PHLDB1Q86UU1 1377 aa15.66■□□□□ 0.1
USP28-201ENST00000003302 MAPKBP1O60336 1514 aa15.65■□□□□ 0.1
USP28-201ENST00000003302 DNAJC5BQ9UF47 199 aa15.63■□□□□ 0.09
USP28-201ENST00000003302 FAM50AQ14320 339 aaKnown RBP15.62■□□□□ 0.09
USP28-201ENST00000003302 SUPT16HQ9Y5B9 1047 aaKnown RBP15.61■□□□□ 0.09
USP28-201ENST00000003302 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms