RNA–Protein interactions for RNA: ENSMUST00000100164.4

Hoxc4-201, Transcript of Homeobox protein Hox-C4, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Hoxc4, Length 1,983 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4-201ENSMUST00000100164 Gm35339A0A140LHH9 1649 aa26.78■■□□□ 1.88
Hoxc4-201ENSMUST00000100164 NischQ80TM9 1593 aa26.3■■□□□ 1.8
Hoxc4-201ENSMUST00000100164 Abcc8B2RUS7 1588 aa25.5■■□□□ 1.67
Hoxc4-201ENSMUST00000100164 Abcc9P70170 1546 aa25.45■■□□□ 1.67
Hoxc4-201ENSMUST00000100164 ScribQ80U72 1612 aa24.65■■□□□ 1.54
Hoxc4-201ENSMUST00000100164 Rtl1Q7M732 1744 aa24.2■■□□□ 1.46
Hoxc4-201ENSMUST00000100164 Rpgrip1Q9EPQ2 1331 aa24.08■■□□□ 1.45
Hoxc4-201ENSMUST00000100164 NacadQ5SWP3 1504 aa23.93■■□□□ 1.42
Hoxc4-201ENSMUST00000100164 Ccdc180J3QNE4 1664 aa23.84■■□□□ 1.41
Hoxc4-201ENSMUST00000100164 Kdm5dQ62240 1548 aa23.81■■□□□ 1.4
Hoxc4-201ENSMUST00000100164 Dcaf1Q80TR8 1506 aa23.51■■□□□ 1.35
Hoxc4-201ENSMUST00000100164 Sycp2Q9CUU3 1500 aa23.45■■□□□ 1.34
Hoxc4-201ENSMUST00000100164 Rhox8Q6VSS7 320 aa23.36■■□□□ 1.33
Hoxc4-201ENSMUST00000100164 Acin1Q9JIX8 1338 aaKnown RBP23.2■■□□□ 1.3
Hoxc4-201ENSMUST00000100164 BicraF8VPZ9 1578 aa23.1■■□□□ 1.29
Hoxc4-201ENSMUST00000100164 Zcchc6Q5BLK4 1491 aaKnown RBP22.92■■□□□ 1.26
Hoxc4-201ENSMUST00000100164 Rb1cc1Q9ESK9 1588 aa22.89■■□□□ 1.25
Hoxc4-201ENSMUST00000100164 Crybg2B7ZCC2 1516 aa22.65■■□□□ 1.22
Hoxc4-201ENSMUST00000100164 Dnajc5bQ9CQ94 199 aa22.65■■□□□ 1.22
Hoxc4-201ENSMUST00000100164 Pcgf6Q99NA9 353 aa22.64■■□□□ 1.21
Hoxc4-201ENSMUST00000100164 Baz1aO88379 1555 aa22.6■■□□□ 1.21
Hoxc4-201ENSMUST00000100164 Pds5bQ4VA53 1446 aaKnown RBP22.58■■□□□ 1.21
Hoxc4-201ENSMUST00000100164 HrcG5E8J6 738 aa22.54■■□□□ 1.2
Hoxc4-201ENSMUST00000100164 Thoc2B1AZI6 1594 aaKnown RBP22.41■■□□□ 1.18
Hoxc4-201ENSMUST00000100164 Atad2bE9Q166 1460 aaKnown RBP22.32■■□□□ 1.16
Hoxc4-201ENSMUST00000100164 Ehmt2Q9Z148 1263 aaKnown RBP22.23■■□□□ 1.15
Hoxc4-201ENSMUST00000100164 Trim41Q5NCC3 630 aa22.18■■□□□ 1.14
Hoxc4-201ENSMUST00000100164 Ercc6F8VPZ5 1481 aa22.06■■□□□ 1.12
Hoxc4-201ENSMUST00000100164 Smarca4Q3TKT4 1613 aaKnown RBP22.03■■□□□ 1.12
Hoxc4-201ENSMUST00000100164 Smarca2Q6DIC0 1577 aa22.02■■□□□ 1.12
Hoxc4-201ENSMUST00000100164 Cc2d2aQ8CFW7 1633 aa22■■□□□ 1.11
Hoxc4-201ENSMUST00000100164 Supt5hO55201 1082 aaKnown RBP21.94■■□□□ 1.1
Hoxc4-201ENSMUST00000100164 Iqgap2Q3UQ44 1575 aa21.92■■□□□ 1.1
Hoxc4-201ENSMUST00000100164 Fam135aQ6NS59 1506 aa21.89■■□□□ 1.1
Hoxc4-201ENSMUST00000100164 Cecr2E9Q2Z1 1453 aa21.85■■□□□ 1.09
Hoxc4-201ENSMUST00000100164 Baz1bQ9Z277 1479 aa21.81■■□□□ 1.08
Hoxc4-201ENSMUST00000100164 Neurod1Q60867 357 aa21.79■■□□□ 1.08
Hoxc4-201ENSMUST00000100164 Wdr62Q3U3T8 1523 aa21.78■■□□□ 1.08
Hoxc4-201ENSMUST00000100164 Las1lA2BE28 776 aaKnown RBP21.76■■□□□ 1.07
Hoxc4-201ENSMUST00000100164 Frmpd1A2AKB4 1549 aa21.74■■□□□ 1.07
Hoxc4-201ENSMUST00000100164 Phldb1Q6PDH0 1371 aaKnown RBP21.71■■□□□ 1.07
Hoxc4-201ENSMUST00000100164 Cep164Q5DU05 1446 aa21.57■■□□□ 1.04
Hoxc4-201ENSMUST00000100164 Ccdc136Q3TVA9 1136 aa21.56■■□□□ 1.04
Hoxc4-201ENSMUST00000100164 Ubl4bQ9CQ84 188 aa21.46■■□□□ 1.03
Hoxc4-201ENSMUST00000100164 NefmP08553 848 aa21.43■■□□□ 1.02
Hoxc4-201ENSMUST00000100164 CftrP26361 1476 aa21.39■■□□□ 1.01
Hoxc4-201ENSMUST00000100164 Cttnbp2B9EJA2 1648 aa21.37■■□□□ 1.01
Hoxc4-201ENSMUST00000100164 Unc13aQ4KUS2 1712 aa21.37■■□□□ 1.01
Hoxc4-201ENSMUST00000100164 Mrc2Q64449 1479 aa21.37■■□□□ 1.01
Hoxc4-201ENSMUST00000100164 Anks4bQ8K3X6 423 aa21.35■■□□□ 1.01
Hoxc4-201ENSMUST00000100164 Myt1Q8CFC2 1127 aa21.32■■□□□ 1
Hoxc4-201ENSMUST00000100164 Brd4Q9ESU6 1400 aaKnown RBP21.31■■□□□ 1
Hoxc4-201ENSMUST00000100164 Synj1Q8CHC4 1574 aa21.26■□□□□ 0.99
Hoxc4-201ENSMUST00000100164 1700123L14RikQ3V2K7 440 aa21.25■□□□□ 0.99
Hoxc4-201ENSMUST00000100164 Cngb1E1AZ71 1325 aa21.24■□□□□ 0.99
Hoxc4-201ENSMUST00000100164 Zeb1Q64318 1117 aa21.22■□□□□ 0.99
Hoxc4-201ENSMUST00000100164 Sall2Q9QX96 1004 aa21.19■□□□□ 0.98
Hoxc4-201ENSMUST00000100164 CenpbP27790 599 aa21.07■□□□□ 0.96
Hoxc4-201ENSMUST00000100164 Mier1Q5UAK0 511 aa21.07■□□□□ 0.96
Hoxc4-201ENSMUST00000100164 Csrnp3P59055 597 aa21.04■□□□□ 0.96
Hoxc4-201ENSMUST00000100164 Aplp2Q06335 707 aa21.03■□□□□ 0.96
Hoxc4-201ENSMUST00000100164 Rsf1E9PWW9 1441 aaKnown RBP20.96■□□□□ 0.95
Hoxc4-201ENSMUST00000100164 Esf1Q3V1V3 845 aaKnown RBP20.94■□□□□ 0.94
Hoxc4-201ENSMUST00000100164 Cux2P70298 1426 aa20.92■□□□□ 0.94
Hoxc4-201ENSMUST00000100164 Kif15Q6P9L6 1387 aa20.89■□□□□ 0.93
Hoxc4-201ENSMUST00000100164 Lrriq1Q0P5X1 1673 aa20.86■□□□□ 0.93
Hoxc4-201ENSMUST00000100164 Lamc3Q9R0B6 1581 aa20.82■□□□□ 0.92
Hoxc4-201ENSMUST00000100164 Cdk11bP24788 784 aaKnown RBP20.81■□□□□ 0.92
Hoxc4-201ENSMUST00000100164 Dnajc5P60904 198 aa20.79■□□□□ 0.92
Hoxc4-201ENSMUST00000100164 Chic1Q8CBW7 227 aa20.78■□□□□ 0.92
Hoxc4-201ENSMUST00000100164 Kif21aQ9QXL2 1672 aa20.76■□□□□ 0.91
Hoxc4-201ENSMUST00000100164 ClspnQ80YR7 1315 aa20.73■□□□□ 0.91
Hoxc4-201ENSMUST00000100164 Nop58Q6DFW4 536 aaKnown RBP20.72■□□□□ 0.91
Hoxc4-201ENSMUST00000100164 Npm1Q61937 292 aaKnown RBP20.7■□□□□ 0.9
Hoxc4-201ENSMUST00000100164 Gab3Q8BSM5 595 aa20.68■□□□□ 0.9
Hoxc4-201ENSMUST00000100164 Aebp2Q9Z248 504 aaKnown RBP20.64■□□□□ 0.89
Hoxc4-201ENSMUST00000100164 Ccdc88bQ4QRL3 1481 aa20.63■□□□□ 0.89
Hoxc4-201ENSMUST00000100164 Wdr66E9Q743 1299 aa20.61■□□□□ 0.89
Hoxc4-201ENSMUST00000100164 Eif4g3Q80XI3 1579 aaKnown RBP20.61■□□□□ 0.89
Hoxc4-201ENSMUST00000100164 Golga3P55937 1487 aa20.58■□□□□ 0.89
Hoxc4-201ENSMUST00000100164 Ccdc18Q640L5 1455 aa20.53■□□□□ 0.88
Hoxc4-201ENSMUST00000100164 TnnQ80Z71 1560 aa20.53■□□□□ 0.88
Hoxc4-201ENSMUST00000100164 Shroom2A2ALU4 1481 aa20.51■□□□□ 0.87
Hoxc4-201ENSMUST00000100164 Dhx29Q6PGC1 1365 aaKnown RBP20.48■□□□□ 0.87
Hoxc4-201ENSMUST00000100164 Urb2E9Q7L1 1524 aaKnown RBP20.47■□□□□ 0.87
Hoxc4-201ENSMUST00000100164 Top2bQ64511 1612 aa20.46■□□□□ 0.87
Hoxc4-201ENSMUST00000100164 LrpprcQ6PB66 1392 aaKnown RBP20.44■□□□□ 0.86
Hoxc4-201ENSMUST00000100164 Plb1Q3TTY0 1478 aa20.42■□□□□ 0.86
Hoxc4-201ENSMUST00000100164 Camsap1A2AHC3 1581 aa20.4■□□□□ 0.86
Hoxc4-201ENSMUST00000100164 DiexfQ8BTT6 772 aaKnown RBP20.39■□□□□ 0.85
Hoxc4-201ENSMUST00000100164 Crocc2F6XLV1 1638 aa20.37■□□□□ 0.85
Hoxc4-201ENSMUST00000100164 Il27Q8K3I6 234 aa20.34■□□□□ 0.85
Hoxc4-201ENSMUST00000100164 UbtfP25976 765 aaKnown RBP20.33■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 TonslQ6NZL6 1363 aa20.32■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 Ift140E9PY46 1464 aa20.31■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 PogzQ8BZH4 1409 aaKnown RBP20.3■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 Fmn1Q05860 1466 aa20.3■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 Rapgef2Q8CHG7 1496 aa20.27■□□□□ 0.84
Hoxc4-201ENSMUST00000100164 Tnnt3Q9QZ47 272 aa20.26■□□□□ 0.83
Hoxc4-201ENSMUST00000100164 Rusc2Q80U22 1514 aa20.23■□□□□ 0.83
Retrieved 100 of 22,080 RNA–protein pairs in 86.5 ms