RNA–Protein interactions for RNA: ENSMUST00000066432.11

Scn3a-201, Transcript of Sodium channel protein, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Scn3a, Length 9,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn3a-201ENSMUST00000066432 Rhox8Q6VSS7 320 aa12.56□□□□□ -0.4
Scn3a-201ENSMUST00000066432 Rtl1Q7M732 1744 aa12.29□□□□□ -0.44
Scn3a-201ENSMUST00000066432 NischQ80TM9 1593 aa12.27□□□□□ -0.44
Scn3a-201ENSMUST00000066432 Rpgrip1Q9EPQ2 1331 aa12.01□□□□□ -0.49
Scn3a-201ENSMUST00000066432 Ccdc180J3QNE4 1664 aa11.79□□□□□ -0.52
Scn3a-201ENSMUST00000066432 Gm35339A0A140LHH9 1649 aa11.6□□□□□ -0.55
Scn3a-201ENSMUST00000066432 Abcc9P70170 1546 aa11.6□□□□□ -0.55
Scn3a-201ENSMUST00000066432 Cngb1E1AZ71 1325 aa11.58□□□□□ -0.56
Scn3a-201ENSMUST00000066432 Trim41Q5NCC3 630 aa11.53□□□□□ -0.56
Scn3a-201ENSMUST00000066432 Esf1Q3V1V3 845 aaKnown RBP11.28□□□□□ -0.6
Scn3a-201ENSMUST00000066432 Abcc8B2RUS7 1588 aa11.24□□□□□ -0.61
Scn3a-201ENSMUST00000066432 Las1lA2BE28 776 aaKnown RBP11.12□□□□□ -0.63
Scn3a-201ENSMUST00000066432 HrcG5E8J6 738 aa11.08□□□□□ -0.64
Scn3a-201ENSMUST00000066432 Ccdc136Q3TVA9 1136 aa11.07□□□□□ -0.64
Scn3a-201ENSMUST00000066432 Pelp1Q9DBD5 1123 aaKnown RBP11.02□□□□□ -0.65
Scn3a-201ENSMUST00000066432 Npm2Q80W85 207 aa10.97□□□□□ -0.65
Scn3a-201ENSMUST00000066432 NefmP08553 848 aa10.95□□□□□ -0.66
Scn3a-201ENSMUST00000066432 Zeb1Q64318 1117 aa10.94□□□□□ -0.66
Scn3a-201ENSMUST00000066432 Stra8P70278 393 aa10.92□□□□□ -0.66
Scn3a-201ENSMUST00000066432 Zcchc6Q5BLK4 1491 aaKnown RBP10.91□□□□□ -0.66
Scn3a-201ENSMUST00000066432 Rb1cc1Q9ESK9 1588 aa10.88□□□□□ -0.67
Scn3a-201ENSMUST00000066432 Dcaf1Q80TR8 1506 aa10.86□□□□□ -0.67
Scn3a-201ENSMUST00000066432 Brd4Q9ESU6 1400 aaKnown RBP10.83□□□□□ -0.68
Scn3a-201ENSMUST00000066432 NacadQ5SWP3 1504 aa10.79□□□□□ -0.68
Scn3a-201ENSMUST00000066432 Ube2uB1AUC4 352 aa10.76□□□□□ -0.69
Scn3a-201ENSMUST00000066432 Acin1Q9JIX8 1338 aaKnown RBP10.73□□□□□ -0.69
Scn3a-201ENSMUST00000066432 Wdr66E9Q743 1299 aa10.71□□□□□ -0.69
Scn3a-201ENSMUST00000066432 Baz1aO88379 1555 aa10.69□□□□□ -0.7
Scn3a-201ENSMUST00000066432 Gab3Q8BSM5 595 aa10.63□□□□□ -0.71
Scn3a-201ENSMUST00000066432 Hdac5Q9Z2V6 1113 aa10.62□□□□□ -0.71
Scn3a-201ENSMUST00000066432 Myt1lP97500 1187 aa10.62□□□□□ -0.71
Scn3a-201ENSMUST00000066432 Anp32bQ9EST5 272 aaKnown RBP10.58□□□□□ -0.72
Scn3a-201ENSMUST00000066432 Cep164Q5DU05 1446 aa10.51□□□□□ -0.73
Scn3a-201ENSMUST00000066432 Crybg2B7ZCC2 1516 aa10.51□□□□□ -0.73
Scn3a-201ENSMUST00000066432 Myt1Q8CFC2 1127 aa10.46□□□□□ -0.74
Scn3a-201ENSMUST00000066432 Tnnt3Q9QZ47 272 aa10.45□□□□□ -0.74
Scn3a-201ENSMUST00000066432 Ehmt2Q9Z148 1263 aaKnown RBP10.42□□□□□ -0.74
Scn3a-201ENSMUST00000066432 Npm1Q61937 292 aaKnown RBP10.41□□□□□ -0.74
Scn3a-201ENSMUST00000066432 NclP09405 707 aaKnown RBP10.41□□□□□ -0.74
Scn3a-201ENSMUST00000066432 Ercc6F8VPZ5 1481 aa10.4□□□□□ -0.74
Scn3a-201ENSMUST00000066432 CenpbP27790 599 aa10.39□□□□□ -0.75
Scn3a-201ENSMUST00000066432 Kdm5dQ62240 1548 aa10.39□□□□□ -0.75
Scn3a-201ENSMUST00000066432 Neurod1Q60867 357 aa10.38□□□□□ -0.75
Scn3a-201ENSMUST00000066432 Ccer2J3QPU5 274 aa10.37□□□□□ -0.75
Scn3a-201ENSMUST00000066432 UbtfP25976 765 aaKnown RBP10.36□□□□□ -0.75
Scn3a-201ENSMUST00000066432 Il27Q8K3I6 234 aa10.32□□□□□ -0.76
Scn3a-201ENSMUST00000066432 Smarca2Q6DIC0 1577 aa10.31□□□□□ -0.76
Scn3a-201ENSMUST00000066432 Ccdc18Q640L5 1455 aa10.3□□□□□ -0.76
Scn3a-201ENSMUST00000066432 Cdk11bP24788 784 aaKnown RBP10.29□□□□□ -0.76
Scn3a-201ENSMUST00000066432 NrdcQ8BHG1 1161 aa10.29□□□□□ -0.76
Scn3a-201ENSMUST00000066432 Rsf1E9PWW9 1441 aaKnown RBP10.27□□□□□ -0.76
Scn3a-201ENSMUST00000066432 NeflP08551 543 aa10.27□□□□□ -0.77
Scn3a-201ENSMUST00000066432 Golga3P55937 1487 aa10.26□□□□□ -0.77
Scn3a-201ENSMUST00000066432 Pds5bQ4VA53 1446 aaKnown RBP10.25□□□□□ -0.77
Scn3a-201ENSMUST00000066432 TonslQ6NZL6 1363 aa10.23□□□□□ -0.77
Scn3a-201ENSMUST00000066432 Rtl5Q5DTT4 599 aa10.23□□□□□ -0.77
Scn3a-201ENSMUST00000066432 Cttnbp2B9EJA2 1648 aa10.2□□□□□ -0.78
Scn3a-201ENSMUST00000066432 Sycp2Q9CUU3 1500 aa10.2□□□□□ -0.78
Scn3a-201ENSMUST00000066432 Fam50aQ9WV03 339 aaKnown RBP10.19□□□□□ -0.78
Scn3a-201ENSMUST00000066432 Clstn2Q9ER65 966 aa10.14□□□□□ -0.79
Scn3a-201ENSMUST00000066432 Clip1Q922J3 1391 aa10.13□□□□□ -0.79
Scn3a-201ENSMUST00000066432 Fmn1Q05860 1466 aa10.11□□□□□ -0.79
Scn3a-201ENSMUST00000066432 Smarca4Q3TKT4 1613 aaKnown RBP10.1□□□□□ -0.79
Scn3a-201ENSMUST00000066432 ClspnQ80YR7 1315 aa10.08□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Os9Q8K2C7 672 aa10.07□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Amer1Q7TS75 1132 aa10.07□□□□□ -0.8
Scn3a-201ENSMUST00000066432 ScribQ80U72 1612 aa10.07□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Eif5bQ05D44 1216 aaKnown RBP10.07□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Nop58Q6DFW4 536 aaKnown RBP10.04□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Eea1Q8BL66 1411 aa10.04□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Polr1aO35134 1717 aaKnown RBP10.03□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Ubl4bQ9CQ84 188 aa10.03□□□□□ -0.8
Scn3a-201ENSMUST00000066432 Kif15Q6P9L6 1387 aa10.01□□□□□ -0.81
Scn3a-201ENSMUST00000066432 Upf2A2AT37 1269 aaKnown RBP10.01□□□□□ -0.81
Scn3a-201ENSMUST00000066432 Mia2Q91ZV0 1396 aa9.99□□□□□ -0.81
Scn3a-201ENSMUST00000066432 Atad2bE9Q166 1460 aaKnown RBP9.98□□□□□ -0.81
Scn3a-201ENSMUST00000066432 Arid4bA2CG63 1314 aaKnown RBP9.97□□□□□ -0.81
Scn3a-201ENSMUST00000066432 Zfp777B9EKF4 885 aa9.96□□□□□ -0.82
Scn3a-201ENSMUST00000066432 Mier1Q5UAK0 511 aa9.95□□□□□ -0.82
Scn3a-201ENSMUST00000066432 Setd5Q5XJV7 1441 aa9.95□□□□□ -0.82
Scn3a-201ENSMUST00000066432 Baz1bQ9Z277 1479 aa9.95□□□□□ -0.82
Scn3a-201ENSMUST00000066432 Ap3b1Q9Z1T1 1105 aa9.95□□□□□ -0.82
Scn3a-201ENSMUST00000066432 4930567H17RikQ3V0K5 233 aa9.92□□□□□ -0.82
Scn3a-201ENSMUST00000066432 Pcgf6Q99NA9 353 aa9.91□□□□□ -0.82
Scn3a-201ENSMUST00000066432 BlmO88700 1416 aa9.9□□□□□ -0.83
Scn3a-201ENSMUST00000066432 CftrP26361 1476 aa9.88□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Gm13697A2AK42 830 aa9.88□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Dhx57Q6P5D3 1388 aaKnown RBP9.85□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Slc24a1Q91WD8 1130 aa9.85□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Iqgap2Q3UQ44 1575 aa9.85□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Rpap1Q80TE0 1409 aa9.84□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Phldb1Q6PDH0 1371 aaKnown RBP9.84□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Plekhg3Q4VAC9 1341 aa9.84□□□□□ -0.83
Scn3a-201ENSMUST00000066432 Rsph4aQ8BYM7 716 aa9.83□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Cux1P53564 1515 aa9.82□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Synj1Q8CHC4 1574 aa9.82□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Fyco1Q8VDC1 1437 aa9.82□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Nlrp6Q91WS2 869 aa9.81□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Cwc22Q8C5N3 908 aaKnown RBP9.81□□□□□ -0.84
Scn3a-201ENSMUST00000066432 Mtus2Q3UHD3 1353 aa9.81□□□□□ -0.84
Retrieved 100 of 22,080 RNA–protein pairs in 44.7 ms