RNA–Protein interactions for RNA: ENSMUST00000039443.13

Ccdc50-201, Transcript of Coiled-coil domain-containing protein 50, mousemouse

TSL 1 (best) BASIC

Gene Ccdc50, Length 2,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc50-201ENSMUST00000039443 Gm35339A0A140LHH9 1649 aa36.64■■■■□ 3.46
Ccdc50-201ENSMUST00000039443 NischQ80TM9 1593 aa36.37■■■■□ 3.41
Ccdc50-201ENSMUST00000039443 Abcc9P70170 1546 aa35.27■■■■□ 3.24
Ccdc50-201ENSMUST00000039443 Abcc8B2RUS7 1588 aa35.01■■■■□ 3.2
Ccdc50-201ENSMUST00000039443 Rtl1Q7M732 1744 aa33.8■■■■□ 3
Ccdc50-201ENSMUST00000039443 ScribQ80U72 1612 aa33.42■■■□□ 2.94
Ccdc50-201ENSMUST00000039443 Rhox8Q6VSS7 320 aa33.25■■■□□ 2.91
Ccdc50-201ENSMUST00000039443 Ccdc180J3QNE4 1664 aa33.16■■■□□ 2.9
Ccdc50-201ENSMUST00000039443 NacadQ5SWP3 1504 aa32.46■■■□□ 2.79
Ccdc50-201ENSMUST00000039443 Kdm5dQ62240 1548 aa32.45■■■□□ 2.79
Ccdc50-201ENSMUST00000039443 Dcaf1Q80TR8 1506 aa32.44■■■□□ 2.78
Ccdc50-201ENSMUST00000039443 Rpgrip1Q9EPQ2 1331 aa32.32■■■□□ 2.76
Ccdc50-201ENSMUST00000039443 Zcchc6Q5BLK4 1491 aaKnown RBP32.14■■■□□ 2.74
Ccdc50-201ENSMUST00000039443 Sycp2Q9CUU3 1500 aa31.79■■■□□ 2.68
Ccdc50-201ENSMUST00000039443 Rb1cc1Q9ESK9 1588 aa31.74■■■□□ 2.67
Ccdc50-201ENSMUST00000039443 HrcG5E8J6 738 aa31.41■■■□□ 2.62
Ccdc50-201ENSMUST00000039443 Acin1Q9JIX8 1338 aaKnown RBP31.37■■■□□ 2.61
Ccdc50-201ENSMUST00000039443 Baz1aO88379 1555 aa31.35■■■□□ 2.61
Ccdc50-201ENSMUST00000039443 BicraF8VPZ9 1578 aa31.25■■■□□ 2.59
Ccdc50-201ENSMUST00000039443 Crybg2B7ZCC2 1516 aa31.2■■■□□ 2.58
Ccdc50-201ENSMUST00000039443 Ccdc136Q3TVA9 1136 aa30.71■■■□□ 2.51
Ccdc50-201ENSMUST00000039443 Ehmt2Q9Z148 1263 aaKnown RBP30.51■■■□□ 2.47
Ccdc50-201ENSMUST00000039443 Smarca2Q6DIC0 1577 aa30.49■■■□□ 2.47
Ccdc50-201ENSMUST00000039443 Trim41Q5NCC3 630 aa30.42■■■□□ 2.46
Ccdc50-201ENSMUST00000039443 Cep164Q5DU05 1446 aa30.32■■■□□ 2.44
Ccdc50-201ENSMUST00000039443 Pds5bQ4VA53 1446 aaKnown RBP30.28■■■□□ 2.44
Ccdc50-201ENSMUST00000039443 Pcgf6Q99NA9 353 aa30.21■■■□□ 2.43
Ccdc50-201ENSMUST00000039443 Cecr2E9Q2Z1 1453 aa30.13■■■□□ 2.41
Ccdc50-201ENSMUST00000039443 Atad2bE9Q166 1460 aaKnown RBP30.11■■■□□ 2.41
Ccdc50-201ENSMUST00000039443 Smarca4Q3TKT4 1613 aaKnown RBP30.07■■■□□ 2.4
Ccdc50-201ENSMUST00000039443 Iqgap2Q3UQ44 1575 aa29.82■■■□□ 2.36
Ccdc50-201ENSMUST00000039443 Thoc2B1AZI6 1594 aaKnown RBP29.81■■■□□ 2.36
Ccdc50-201ENSMUST00000039443 Brd4Q9ESU6 1400 aaKnown RBP29.67■■■□□ 2.34
Ccdc50-201ENSMUST00000039443 Ercc6F8VPZ5 1481 aa29.64■■■□□ 2.34
Ccdc50-201ENSMUST00000039443 CftrP26361 1476 aa29.58■■■□□ 2.33
Ccdc50-201ENSMUST00000039443 Rsf1E9PWW9 1441 aaKnown RBP29.57■■■□□ 2.32
Ccdc50-201ENSMUST00000039443 Synj1Q8CHC4 1574 aa29.56■■■□□ 2.32
Ccdc50-201ENSMUST00000039443 Cttnbp2B9EJA2 1648 aa29.54■■■□□ 2.32
Ccdc50-201ENSMUST00000039443 Supt5hO55201 1082 aaKnown RBP29.51■■■□□ 2.31
Ccdc50-201ENSMUST00000039443 Dnajc5bQ9CQ94 199 aa29.5■■■□□ 2.31
Ccdc50-201ENSMUST00000039443 Wdr62Q3U3T8 1523 aa29.49■■■□□ 2.31
Ccdc50-201ENSMUST00000039443 Frmpd1A2AKB4 1549 aa29.44■■■□□ 2.3
Ccdc50-201ENSMUST00000039443 Golga3P55937 1487 aa29.43■■■□□ 2.3
Ccdc50-201ENSMUST00000039443 Cngb1E1AZ71 1325 aa29.4■■■□□ 2.3
Ccdc50-201ENSMUST00000039443 NefmP08553 848 aa29.4■■■□□ 2.3
Ccdc50-201ENSMUST00000039443 Chic1Q8CBW7 227 aa29.39■■■□□ 2.3
Ccdc50-201ENSMUST00000039443 Cc2d2aQ8CFW7 1633 aa29.34■■■□□ 2.29
Ccdc50-201ENSMUST00000039443 Ccdc88bQ4QRL3 1481 aa29.27■■■□□ 2.28
Ccdc50-201ENSMUST00000039443 Fam135aQ6NS59 1506 aa29.25■■■□□ 2.27
Ccdc50-201ENSMUST00000039443 Gab3Q8BSM5 595 aa29.2■■■□□ 2.27
Ccdc50-201ENSMUST00000039443 Phldb1Q6PDH0 1371 aaKnown RBP29.16■■■□□ 2.26
Ccdc50-201ENSMUST00000039443 Top2bQ64511 1612 aa29.07■■■□□ 2.24
Ccdc50-201ENSMUST00000039443 Unc13aQ4KUS2 1712 aa29.06■■■□□ 2.24
Ccdc50-201ENSMUST00000039443 Esf1Q3V1V3 845 aaKnown RBP29.05■■■□□ 2.24
Ccdc50-201ENSMUST00000039443 Mier1Q5UAK0 511 aa29.05■■■□□ 2.24
Ccdc50-201ENSMUST00000039443 Baz1bQ9Z277 1479 aa28.98■■■□□ 2.23
Ccdc50-201ENSMUST00000039443 Zeb1Q64318 1117 aa28.97■■■□□ 2.23
Ccdc50-201ENSMUST00000039443 Neurod1Q60867 357 aa28.94■■■□□ 2.22
Ccdc50-201ENSMUST00000039443 Ubl4bQ9CQ84 188 aa28.84■■■□□ 2.21
Ccdc50-201ENSMUST00000039443 Las1lA2BE28 776 aaKnown RBP28.78■■■□□ 2.2
Ccdc50-201ENSMUST00000039443 Rapgef2Q8CHG7 1496 aa28.71■■■□□ 2.19
Ccdc50-201ENSMUST00000039443 Sall2Q9QX96 1004 aa28.69■■■□□ 2.18
Ccdc50-201ENSMUST00000039443 Fmn1Q05860 1466 aa28.6■■■□□ 2.17
Ccdc50-201ENSMUST00000039443 Lamc3Q9R0B6 1581 aa28.6■■■□□ 2.17
Ccdc50-201ENSMUST00000039443 Mrc2Q64449 1479 aa28.56■■■□□ 2.16
Ccdc50-201ENSMUST00000039443 Kif15Q6P9L6 1387 aa28.56■■■□□ 2.16
Ccdc50-201ENSMUST00000039443 Top2aQ01320 1528 aaKnown RBP28.55■■■□□ 2.16
Ccdc50-201ENSMUST00000039443 Anks4bQ8K3X6 423 aa28.48■■■□□ 2.15
Ccdc50-201ENSMUST00000039443 TnnQ80Z71 1560 aa28.45■■■□□ 2.15
Ccdc50-201ENSMUST00000039443 Cux2P70298 1426 aa28.42■■■□□ 2.14
Ccdc50-201ENSMUST00000039443 Cep162Q6ZQ06 1403 aa28.41■■■□□ 2.14
Ccdc50-201ENSMUST00000039443 UbtfP25976 765 aaKnown RBP28.41■■■□□ 2.14
Ccdc50-201ENSMUST00000039443 ClspnQ80YR7 1315 aa28.31■■■□□ 2.12
Ccdc50-201ENSMUST00000039443 Wdr66E9Q743 1299 aa28.24■■■□□ 2.11
Ccdc50-201ENSMUST00000039443 Eif4g1Q6NZJ6 1600 aaKnown RBP28.19■■■□□ 2.1
Ccdc50-201ENSMUST00000039443 Aebp2Q9Z248 504 aaKnown RBP28.17■■■□□ 2.1
Ccdc50-201ENSMUST00000039443 Ccdc18Q640L5 1455 aa28.16■■■□□ 2.1
Ccdc50-201ENSMUST00000039443 Npm1Q61937 292 aaKnown RBP28.16■■■□□ 2.1
Ccdc50-201ENSMUST00000039443 Camsap1A2AHC3 1581 aa28.14■■■□□ 2.09
Ccdc50-201ENSMUST00000039443 Cdk11bP24788 784 aaKnown RBP28.13■■■□□ 2.09
Ccdc50-201ENSMUST00000039443 TonslQ6NZL6 1363 aa28.09■■■□□ 2.09
Ccdc50-201ENSMUST00000039443 Kif21aQ9QXL2 1672 aa28.07■■■□□ 2.08
Ccdc50-201ENSMUST00000039443 Myt1lP97500 1187 aa28.07■■■□□ 2.08
Ccdc50-201ENSMUST00000039443 Nop58Q6DFW4 536 aaKnown RBP28.06■■■□□ 2.08
Ccdc50-201ENSMUST00000039443 Clip1Q922J3 1391 aa28.05■■■□□ 2.08
Ccdc50-201ENSMUST00000039443 Ncapd3Q6ZQK0 1506 aa28■■■□□ 2.07
Ccdc50-201ENSMUST00000039443 Npm2Q80W85 207 aa28■■■□□ 2.07
Ccdc50-201ENSMUST00000039443 Il27Q8K3I6 234 aa28■■■□□ 2.07
Ccdc50-201ENSMUST00000039443 1700123L14RikQ3V2K7 440 aa27.99■■■□□ 2.07
Ccdc50-201ENSMUST00000039443 Csrnp3P59055 597 aa27.94■■■□□ 2.06
Ccdc50-201ENSMUST00000039443 LrpprcQ6PB66 1392 aaKnown RBP27.93■■■□□ 2.06
Ccdc50-201ENSMUST00000039443 Lrriq1Q0P5X1 1673 aa27.88■■■□□ 2.05
Ccdc50-201ENSMUST00000039443 Aplp2Q06335 707 aa27.88■■■□□ 2.05
Ccdc50-201ENSMUST00000039443 Dhx29Q6PGC1 1365 aaKnown RBP27.87■■■□□ 2.05
Ccdc50-201ENSMUST00000039443 PogzQ8BZH4 1409 aaKnown RBP27.81■■■□□ 2.04
Ccdc50-201ENSMUST00000039443 Grin2bQ01097 1482 aa27.81■■■□□ 2.04
Ccdc50-201ENSMUST00000039443 Arhgap35Q91YM2 1499 aa27.79■■■□□ 2.04
Ccdc50-201ENSMUST00000039443 Plekhg3Q4VAC9 1341 aa27.78■■■□□ 2.04
Ccdc50-201ENSMUST00000039443 NrkQ9R0G8 1455 aa27.77■■■□□ 2.04
Ccdc50-201ENSMUST00000039443 Crocc2F6XLV1 1638 aa27.75■■■□□ 2.03
Retrieved 100 of 22,080 RNA–protein pairs in 11.7 ms