RNA–Protein interactions for RNA: ENSMUST00000021039.11

Lig3-201, Transcript of DNA ligase 3, mousemouse

APPRIS ALT2 TSL 5 BASIC

Gene Lig3, Length 5,957 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3-201ENSMUST00000021039 Rhox8Q6VSS7 320 aa14.68□□□□□ -0.06
Lig3-201ENSMUST00000021039 NischQ80TM9 1593 aa14.46□□□□□ -0.1
Lig3-201ENSMUST00000021039 Abcc9P70170 1546 aa13.67□□□□□ -0.22
Lig3-201ENSMUST00000021039 Abcc8B2RUS7 1588 aa13.51□□□□□ -0.25
Lig3-201ENSMUST00000021039 Gm35339A0A140LHH9 1649 aa13.48□□□□□ -0.25
Lig3-201ENSMUST00000021039 Ccdc136Q3TVA9 1136 aa13.28□□□□□ -0.28
Lig3-201ENSMUST00000021039 Esf1Q3V1V3 845 aaKnown RBP13.24□□□□□ -0.29
Lig3-201ENSMUST00000021039 Trim41Q5NCC3 630 aa13.15□□□□□ -0.3
Lig3-201ENSMUST00000021039 Cngb1E1AZ71 1325 aa13.06□□□□□ -0.32
Lig3-201ENSMUST00000021039 Zcchc6Q5BLK4 1491 aaKnown RBP12.95□□□□□ -0.34
Lig3-201ENSMUST00000021039 NacadQ5SWP3 1504 aa12.81□□□□□ -0.36
Lig3-201ENSMUST00000021039 Zeb1Q64318 1117 aa12.72□□□□□ -0.37
Lig3-201ENSMUST00000021039 Npm2Q80W85 207 aa12.69□□□□□ -0.38
Lig3-201ENSMUST00000021039 Rtl1Q7M732 1744 aa12.68□□□□□ -0.38
Lig3-201ENSMUST00000021039 Rb1cc1Q9ESK9 1588 aa12.67□□□□□ -0.38
Lig3-201ENSMUST00000021039 Gab3Q8BSM5 595 aa12.63□□□□□ -0.39
Lig3-201ENSMUST00000021039 Ccdc180J3QNE4 1664 aa12.56□□□□□ -0.4
Lig3-201ENSMUST00000021039 Kdm5dQ62240 1548 aa12.55□□□□□ -0.4
Lig3-201ENSMUST00000021039 Il27Q8K3I6 234 aa12.54□□□□□ -0.4
Lig3-201ENSMUST00000021039 Dcaf1Q80TR8 1506 aa12.52□□□□□ -0.4
Lig3-201ENSMUST00000021039 Myt1lP97500 1187 aa12.47□□□□□ -0.41
Lig3-201ENSMUST00000021039 Baz1aO88379 1555 aa12.44□□□□□ -0.42
Lig3-201ENSMUST00000021039 Brd4Q9ESU6 1400 aaKnown RBP12.43□□□□□ -0.42
Lig3-201ENSMUST00000021039 HrcG5E8J6 738 aa12.39□□□□□ -0.43
Lig3-201ENSMUST00000021039 Npm1Q61937 292 aaKnown RBP12.37□□□□□ -0.43
Lig3-201ENSMUST00000021039 ScribQ80U72 1612 aa12.34□□□□□ -0.43
Lig3-201ENSMUST00000021039 Sycp2Q9CUU3 1500 aa12.31□□□□□ -0.44
Lig3-201ENSMUST00000021039 Ehmt2Q9Z148 1263 aaKnown RBP12.29□□□□□ -0.44
Lig3-201ENSMUST00000021039 Ubl4bQ9CQ84 188 aa12.28□□□□□ -0.44
Lig3-201ENSMUST00000021039 Ercc6F8VPZ5 1481 aa12.24□□□□□ -0.45
Lig3-201ENSMUST00000021039 Pds5bQ4VA53 1446 aaKnown RBP12.21□□□□□ -0.45
Lig3-201ENSMUST00000021039 Ube2uB1AUC4 352 aa12.2□□□□□ -0.46
Lig3-201ENSMUST00000021039 Rpgrip1Q9EPQ2 1331 aa12.15□□□□□ -0.46
Lig3-201ENSMUST00000021039 Crybg2B7ZCC2 1516 aa12.14□□□□□ -0.47
Lig3-201ENSMUST00000021039 Rsf1E9PWW9 1441 aaKnown RBP12.03□□□□□ -0.48
Lig3-201ENSMUST00000021039 Pelp1Q9DBD5 1123 aaKnown RBP12.01□□□□□ -0.49
Lig3-201ENSMUST00000021039 Kif15Q6P9L6 1387 aa11.99□□□□□ -0.49
Lig3-201ENSMUST00000021039 Las1lA2BE28 776 aaKnown RBP11.98□□□□□ -0.49
Lig3-201ENSMUST00000021039 Ap3b1Q9Z1T1 1105 aa11.98□□□□□ -0.49
Lig3-201ENSMUST00000021039 UbtfP25976 765 aaKnown RBP11.97□□□□□ -0.49
Lig3-201ENSMUST00000021039 Atad2bE9Q166 1460 aaKnown RBP11.95□□□□□ -0.5
Lig3-201ENSMUST00000021039 Golga3P55937 1487 aa11.93□□□□□ -0.5
Lig3-201ENSMUST00000021039 Ccdc18Q640L5 1455 aa11.89□□□□□ -0.51
Lig3-201ENSMUST00000021039 Chic1Q8CBW7 227 aa11.89□□□□□ -0.51
Lig3-201ENSMUST00000021039 Wdr66E9Q743 1299 aa11.87□□□□□ -0.51
Lig3-201ENSMUST00000021039 Cep164Q5DU05 1446 aa11.86□□□□□ -0.51
Lig3-201ENSMUST00000021039 Smarca2Q6DIC0 1577 aa11.85□□□□□ -0.51
Lig3-201ENSMUST00000021039 Smarca4Q3TKT4 1613 aaKnown RBP11.85□□□□□ -0.51
Lig3-201ENSMUST00000021039 Phldb1Q6PDH0 1371 aaKnown RBP11.83□□□□□ -0.52
Lig3-201ENSMUST00000021039 Cecr2E9Q2Z1 1453 aa11.83□□□□□ -0.52
Lig3-201ENSMUST00000021039 CftrP26361 1476 aa11.79□□□□□ -0.52
Lig3-201ENSMUST00000021039 Fam50aQ9WV03 339 aaKnown RBP11.76□□□□□ -0.53
Lig3-201ENSMUST00000021039 Ifnlr1Q8CGK5 535 aa11.75□□□□□ -0.53
Lig3-201ENSMUST00000021039 Lmod2Q3UHZ5 550 aa11.72□□□□□ -0.53
Lig3-201ENSMUST00000021039 Iqgap2Q3UQ44 1575 aa11.72□□□□□ -0.53
Lig3-201ENSMUST00000021039 NefmP08553 848 aa11.72□□□□□ -0.53
Lig3-201ENSMUST00000021039 Synj1Q8CHC4 1574 aa11.69□□□□□ -0.54
Lig3-201ENSMUST00000021039 Fkbp15Q6P9Q6 1216 aaKnown RBP11.69□□□□□ -0.54
Lig3-201ENSMUST00000021039 Ttbk1Q6PCN3 1308 aa11.68□□□□□ -0.54
Lig3-201ENSMUST00000021039 Cttnbp2B9EJA2 1648 aa11.68□□□□□ -0.54
Lig3-201ENSMUST00000021039 Cux2P70298 1426 aa11.67□□□□□ -0.54
Lig3-201ENSMUST00000021039 Fmn1Q05860 1466 aa11.67□□□□□ -0.54
Lig3-201ENSMUST00000021039 NclP09405 707 aaKnown RBP11.67□□□□□ -0.54
Lig3-201ENSMUST00000021039 Clip1Q922J3 1391 aa11.67□□□□□ -0.54
Lig3-201ENSMUST00000021039 Plekhg3Q4VAC9 1341 aa11.64□□□□□ -0.55
Lig3-201ENSMUST00000021039 BicraF8VPZ9 1578 aa11.64□□□□□ -0.55
Lig3-201ENSMUST00000021039 Acin1Q9JIX8 1338 aaKnown RBP11.62□□□□□ -0.55
Lig3-201ENSMUST00000021039 Amer1Q7TS75 1132 aa11.61□□□□□ -0.55
Lig3-201ENSMUST00000021039 Arhgap27A2AB59 869 aa11.56□□□□□ -0.56
Lig3-201ENSMUST00000021039 Setd5Q5XJV7 1441 aa11.53□□□□□ -0.56
Lig3-201ENSMUST00000021039 Cdk11bP24788 784 aaKnown RBP11.5□□□□□ -0.57
Lig3-201ENSMUST00000021039 Ccdc88bQ4QRL3 1481 aa11.5□□□□□ -0.57
Lig3-201ENSMUST00000021039 Hnrnpul2Q00PI9 745 aaKnown RBP11.49□□□□□ -0.57
Lig3-201ENSMUST00000021039 Zbtb7cQ8VCZ7 619 aa11.49□□□□□ -0.57
Lig3-201ENSMUST00000021039 Gm13697A2AK42 830 aa11.48□□□□□ -0.57
Lig3-201ENSMUST00000021039 Os9Q8K2C7 672 aa11.48□□□□□ -0.57
Lig3-201ENSMUST00000021039 LrpprcQ6PB66 1392 aaKnown RBP11.47□□□□□ -0.57
Lig3-201ENSMUST00000021039 BlmO88700 1416 aa11.46□□□□□ -0.57
Lig3-201ENSMUST00000021039 Frmpd1A2AKB4 1549 aa11.46□□□□□ -0.58
Lig3-201ENSMUST00000021039 Eea1Q8BL66 1411 aa11.44□□□□□ -0.58
Lig3-201ENSMUST00000021039 Neurod1Q60867 357 aa11.44□□□□□ -0.58
Lig3-201ENSMUST00000021039 Dhx29Q6PGC1 1365 aaKnown RBP11.43□□□□□ -0.58
Lig3-201ENSMUST00000021039 Mier1Q5UAK0 511 aa11.42□□□□□ -0.58
Lig3-201ENSMUST00000021039 Hdac5Q9Z2V6 1113 aa11.42□□□□□ -0.58
Lig3-201ENSMUST00000021039 Mrc2Q64449 1479 aa11.4□□□□□ -0.58
Lig3-201ENSMUST00000021039 Wdr62Q3U3T8 1523 aa11.39□□□□□ -0.59
Lig3-201ENSMUST00000021039 Plppr3Q7TPB0 716 aa11.39□□□□□ -0.59
Lig3-201ENSMUST00000021039 Baz1bQ9Z277 1479 aa11.38□□□□□ -0.59
Lig3-201ENSMUST00000021039 AknaQ80VW7 1404 aa11.37□□□□□ -0.59
Lig3-201ENSMUST00000021039 CenpbP27790 599 aa11.37□□□□□ -0.59
Lig3-201ENSMUST00000021039 Cc2d2aQ8CFW7 1633 aa11.36□□□□□ -0.59
Lig3-201ENSMUST00000021039 Cep162Q6ZQ06 1403 aa11.35□□□□□ -0.59
Lig3-201ENSMUST00000021039 Ccer2J3QPU5 274 aa11.34□□□□□ -0.59
Lig3-201ENSMUST00000021039 TonslQ6NZL6 1363 aa11.34□□□□□ -0.59
Lig3-201ENSMUST00000021039 Erich6D3Z6S9 713 aa11.34□□□□□ -0.59
Lig3-201ENSMUST00000021039 Rpap1Q80TE0 1409 aa11.33□□□□□ -0.6
Lig3-201ENSMUST00000021039 Clstn2Q9ER65 966 aa11.32□□□□□ -0.6
Lig3-201ENSMUST00000021039 Slc24a1Q91WD8 1130 aa11.32□□□□□ -0.6
Lig3-201ENSMUST00000021039 Carmil1Q6EDY6 1374 aa11.31□□□□□ -0.6
Lig3-201ENSMUST00000021039 4930567H17RikQ3V0K5 233 aa11.3□□□□□ -0.6
Retrieved 100 of 22,080 RNA–protein pairs in 60.3 ms