RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TPSAB1Q15661 275 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 ZIC1Q15915 447 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 UNC5DQ6UXZ4 953 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 VRK3Q8IV63 474 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 SYTL1Q8IYJ3 562 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 KRT222Q8N1A0 295 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 DNAJC22Q8N4W6 341 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 FLVCR1-AS1Q8TAF5 88 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 C17orf62Q9BQA9 187 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 P2RY12Q9H244 342 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 MRM3Q9HC36 420 aaKnown RBP12.3□□□□□ -0.44
PTPRF-214ENST00000496043 ACSS2Q9NR19 701 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 GNPTGQ9UJJ9 305 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 TCFL5Q9UL49 500 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 SLC39A10Q9ULF5 831 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 PPP2R2CQ9Y2T4 447 aa12.3□□□□□ -0.44
PTPRF-214ENST00000496043 TLN1Q9Y490 2541 aaKnown RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 ARGFXA6NJG6 315 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 C9J4A7 227 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 K7EM74 188 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 VAPBO95292 243 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CAPN1P07384 714 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CD9P21926 228 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 RPS3P23396 243 aaKnown RBP eCLIP12.29□□□□□ -0.448e-8■■□□□ 12.3
PTPRF-214ENST00000496043 PKLRP30613 574 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 GABRA4P48169 554 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CCZ1BP86790 482 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CCZ1P86791 482 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 IL10RAQ13651 578 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 TRIP13Q15645 432 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 PTCHD3Q3KNS1 767 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 MRNIPQ6NTE8 343 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 TLDC1Q6P9B6 456 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CES3Q6UWW8 571 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 OTOAQ7RTW8 1153 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 DCUN1D3Q8IWE4 304 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 OTUD6BQ8N6M0 293 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 PRELID2Q8N945 189 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 LKAAEAR1Q8TD35 194 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 PBKQ96KB5 322 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 TCF12Q99081 682 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 DHRS4Q9BTZ2 278 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 ING2Q9H160 280 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 EPN3Q9H201 632 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 GPN3Q9UHW5 284 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 TTC7AQ9ULT0 858 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-214ENST00000496043 PLCL2Q9UPR0 1127 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 JRKLQ9Y4A0 524 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 MRFAP1Q9Y605 127 aa12.29□□□□□ -0.44
PTPRF-214ENST00000496043 PIKFYVEQ9Y2I7 2098 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 TCRBV7S3A2A0A539 114 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 MAGEB16A2A368 324 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 DNAJB5O75953 348 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 S1PR4O95977 384 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 KRT14P02533 472 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 CBSLP0DN79 551 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 NR1D1P20393 614 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 FMO4P31512 558 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 CBSP35520 551 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 TERF1P54274 439 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 DCDP81605 110 aaKnown RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 GPS1Q13098 491 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 SF1Q15637 639 aaKnown RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 MLIPQ5VWP3 458 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 ARMC3Q5W041 872 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 RHBDD2Q6NTF9 364 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 RAB42Q8N4Z0 105 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 C2orf73Q8N5S3 287 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 OR2L8Q8NGY9 312 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 ADAMTS17Q8TE56 1095 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 SKA2Q8WVK7 121 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 MAGOHBQ96A72 148 aaKnown RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 RAD51AP1Q96B01 352 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 MFSD3Q96ES6 412 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 FOPNLQ96NB1 174 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 SLC25A23Q9BV35 468 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 TRIM55Q9BYV6 548 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 INTS7Q9NVH2 962 aaKnown RBP12.28□□□□□ -0.44
PTPRF-214ENST00000496043 IRAK4Q9NWZ3 460 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 SYBUQ9NX95 663 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 SOX13Q9UN79 622 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 PADI2Q9Y2J8 665 aa12.28□□□□□ -0.44
PTPRF-214ENST00000496043 H3BMH7 237 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 H3BMM5 538 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 RASGRF2O14827 1237 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 HCRTR1O43613 425 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 TMEM63AO94886 807 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 C1orf105O95561 183 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 SPTBP11277 2137 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 PAMP19021 973 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 PEBP1P30086 187 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 CCNFP41002 786 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 PTGIRP43119 386 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 MAGEA6P43360 314 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 EIF3BP55884 814 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 FOXK1P85037 733 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 GRB7Q14451 532 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 SSPNQ14714 243 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms