RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 STX5Q13190 355 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ART3Q13508 389 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 CPSF6Q16630 551 aaKnown RBP eCLIP13.04□□□□□ -0.323e-18■■□□□ 11.5
HMGB1-202ENST00000339872 SGO1Q5FBB7 561 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 EOGTQ5NDL2 527 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 TMEM92Q6UXU6 159 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 AMZ2Q86W34 360 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 HORMAD1Q86X24 394 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FUNDC1Q8IVP5 155 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PPFIBP2Q8ND30 876 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 MRGPRX1Q96LB2 322 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 MYOCQ99972 504 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC25A23Q9BV35 468 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 C1QTNF7Q9BXJ2 289 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 MRPL1Q9BYD6 325 aaKnown RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC29A3Q9BZD2 475 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 DPEP2Q9H4A9 486 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FZD3Q9NPG1 666 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 CD93Q9NPY3 652 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SDR39U1Q9NRG7 319 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PHPT1Q9NRX4 125 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 AIG1Q9NVV5 245 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ZNHIT2Q9UHR6 403 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ZNF490Q9ULM2 529 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FZD4Q9ULV1 537 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 NCKAP1Q9Y2A7 1128 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 MANBAO00462 879 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 NR5A2O00482 541 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 LSM1O15116 133 aaKnown RBP13.03□□□□□ -0.32
HMGB1-202ENST00000339872 IMPA1P29218 277 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 TRIM23P36406 574 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 CCR3P51677 355 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 PPP2CBP62714 309 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 PPP2CAP67775 309 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 NAE1Q13564 534 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 C6orf163Q5TEZ5 329 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 REP15Q6BDI9 236 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 KBTBD6Q86V97 674 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 THOC6Q86W42 341 aaKnown RBP13.03□□□□□ -0.32
HMGB1-202ENST00000339872 SPDYE1Q8NFV5 336 aaPredicted RBP13.03□□□□□ -0.32
HMGB1-202ENST00000339872 LRCH3Q96II8 777 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 SLC45A3Q96JT2 553 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 PREBQ9HCU5 417 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 TM7SF3Q9NS93 570 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 INTS7Q9NVH2 962 aaKnown RBP13.03□□□□□ -0.32
HMGB1-202ENST00000339872 SLC23A2Q9UGH3 650 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 NDRG2Q9UN36 371 aaKnown RBP13.03□□□□□ -0.32
HMGB1-202ENST00000339872 GPR45Q9Y5Y3 372 aa13.03□□□□□ -0.32
HMGB1-202ENST00000339872 SHISA7A6NL88 538 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 C9JVG2 144 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 FBP2O00757 339 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 RGS14O43566 566 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 KRT6AP02538 564 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 KRT6BP04259 564 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 MYCLP1P12525 358 aaPredicted RBP13.02□□□□□ -0.32
HMGB1-202ENST00000339872 GLULP15104 373 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 NDUFV2P19404 249 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 TEAD1P28347 426 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 IGFALSP35858 605 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 HALP42357 657 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 KRT6CP48668 564 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 CCINQ13939 588 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 FBXO43Q4G163 708 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 NET1Q7Z628 596 aaPredicted RBP13.02□□□□□ -0.32
HMGB1-202ENST00000339872 EFCAB3Q8N7B9 438 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 MTFMTQ96DP5 389 aaKnown RBP13.02□□□□□ -0.32
HMGB1-202ENST00000339872 WDR41Q9HAD4 459 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 NDE1Q9NXR1 346 aa13.02□□□□□ -0.32
HMGB1-202ENST00000339872 TCRBV21S2A2A0A5A6 115 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 SLC31A1O15431 190 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 CFLARO15519 480 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 SORBS2O94875 1100 aaKnown RBP13.02□□□□□ -0.33
HMGB1-202ENST00000339872 IRX1P78414 480 aaPredicted RBP13.02□□□□□ -0.33
HMGB1-202ENST00000339872 CHIT1Q13231 466 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 IMPG1Q17R60 797 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 AP5B1Q2VPB7 878 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 MAP7D1Q3KQU3 841 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 GGTA1PQ4G0N0 100 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 C1orf146Q5VVC0 180 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 USP30Q70CQ3 517 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 PGAM4Q8N0Y7 254 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 FBXO15Q8NCQ5 510 aaPredicted RBP13.02□□□□□ -0.33
HMGB1-202ENST00000339872 USP7Q93009 1102 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 CCDC124Q96CT7 223 aaKnown RBP13.02□□□□□ -0.33
HMGB1-202ENST00000339872 OR52A5Q9H2C5 316 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 MMP17Q9ULZ9 603 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 PSMD13Q9UNM6 376 aa13.02□□□□□ -0.33
HMGB1-202ENST00000339872 KCNE1BA0A087WTH5 132 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 SLC28A1O00337 649 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 CLGNO14967 610 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 KMOO15229 486 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 ACADLP28330 430 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 RPL38P63173 70 aaKnown RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 HMGCS1Q01581 520 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 TRMT5Q32P41 509 aaKnown RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 BNC2Q6ZN30 1099 aaPredicted RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 RIPOR1Q6ZS17 1223 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 RNF165Q6ZSG1 346 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PDZD3Q86UT5 571 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 OXR1Q8N573 874 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms