RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 POLG2Q9UHN1 485 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 RARRES3Q9UL19 164 aa18.67■□□□□ 0.58
CLN3-260ENST00000637578 UTP11Q9Y3A2 253 aaKnown RBP18.67■□□□□ 0.58
CLN3-260ENST00000637578 TERTO14746 1132 aaKnown RBP18.66■□□□□ 0.58
CLN3-260ENST00000637578 TP73O15350 636 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 KIAA0754O94854 1291 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 TIAF1O95411 115 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 RPS3P23396 243 aaKnown RBP eCLIP18.66■□□□□ 0.584e-6■■□□□ 12.9
CLN3-260ENST00000637578 AOAHP28039 575 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 HIBCHQ6NVY1 386 aaPredicted RBP18.66■□□□□ 0.58
CLN3-260ENST00000637578 LKAAEAR1Q8TD35 194 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 ASZ1Q8WWH4 475 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 ELMO2Q96JJ3 720 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 TSSK1BQ9BXA7 367 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 RAB17Q9H0T7 212 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 ICKQ9UPZ9 632 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 ASF1AQ9Y294 204 aa18.66■□□□□ 0.58
CLN3-260ENST00000637578 IQCF5A8MTL0 148 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 SLCO2B1O94956 709 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 VAPBO95292 243 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 MSL3P1P0C860 447 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 MAGEA3P43357 314 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 ARL4DP49703 201 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 LY6DQ14210 128 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 TBR1Q16650 682 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 SYTL3Q4VX76 610 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 CRTC2Q53ET0 693 aaPredicted RBP18.65■□□□□ 0.58
CLN3-260ENST00000637578 PWWP2BQ6NUJ5 590 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 CES3Q6UWW8 571 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 LRRC6Q86X45 466 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 VRK3Q8IV63 474 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 UNC5BQ8IZJ1 945 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 ZNF843Q8N446 348 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 GALNT6Q8NCL4 622 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 OR8K5Q8NH50 307 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 KIAA1143Q96AT1 154 aaPredicted RBP18.65■□□□□ 0.58
CLN3-260ENST00000637578 ZNF501Q96CX3 271 aaPredicted RBP18.65■□□□□ 0.58
CLN3-260ENST00000637578 SEMA4CQ9C0C4 833 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 XKR8Q9H6D3 395 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 IL17BQ9UHF5 180 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 RPS6KL1Q9Y6S9 549 aa18.65■□□□□ 0.58
CLN3-260ENST00000637578 SLC9B1P1A6NJY1 282 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 ZNF891A8MT65 544 aaPredicted RBP18.64■□□□□ 0.58
CLN3-260ENST00000637578 TYSND1Q2T9J0 566 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 DNAJC21Q5F1R6 531 aaKnown RBP18.64■□□□□ 0.58
CLN3-260ENST00000637578 TMTC4Q5T4D3 741 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 KIAA0930Q6ICG6 404 aaPredicted RBP18.64■□□□□ 0.58
CLN3-260ENST00000637578 FBXO38Q6PIJ6 1188 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 UNC5AQ6ZN44 842 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 EXD3Q8N9H8 876 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 EXTL1Q92935 676 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 MED8Q96G25 268 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 BIRC8Q96P09 236 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 TCF12Q99081 682 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 LATS2Q9NRM7 1088 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 GRHL1Q9NZI5 618 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 WHRNQ9P202 907 aa18.64■□□□□ 0.58
CLN3-260ENST00000637578 MAGEB16A2A368 324 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 GSAPA4D1B5 854 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 C2orf74A8MZ97 194 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 MT-ND3P03897 115 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 ITGB6P18564 788 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 CDH3P22223 829 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 F8A1P23610 371 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 SHMT2P34897 504 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 ADARP55265 1226 aaKnown RBP18.64■□□□□ 0.57
CLN3-260ENST00000637578 C19orf57Q0VDD7 668 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 HSPA14Q0VDF9 509 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 COL9A2Q14055 689 aaPredicted RBP18.64■□□□□ 0.57
CLN3-260ENST00000637578 TRADDQ15628 312 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 MRNIPQ6NTE8 343 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 KRT222Q8N1A0 295 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 AGGF1Q8N302 714 aaeCLIP18.64■□□□□ 0.57
CLN3-260ENST00000637578 BBOF1Q8ND07 529 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 FLVCR1-AS1Q8TAF5 88 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 PWWP2AQ96N64 755 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 SYTL2Q9HCH5 934 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 ACTR10Q9NZ32 417 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 OR6C2Q9NZP2 312 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 DMGDHQ9UI17 866 aaKnown RBP18.64■□□□□ 0.57
CLN3-260ENST00000637578 GNPTGQ9UJJ9 305 aa18.64■□□□□ 0.57
CLN3-260ENST00000637578 FASNP49327 2511 aaKnown RBP18.63■□□□□ 0.57
CLN3-260ENST00000637578 FAM237BA0A1B0GVD1 139 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 ESYT3A0FGR9 886 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 SDR42E2A6NKP2 422 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 SMAPO00193 183 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 NDUFS3O75489 264 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 APOA4P06727 396 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 GUCY2DQ02846 1103 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 CALCOCO2Q13137 446 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 GPR19Q15760 415 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 PTRHD1Q6GMV3 140 aaKnown RBP18.63■□□□□ 0.57
CLN3-260ENST00000637578 SPESP1Q6UW49 350 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 TMEM135Q86UB9 458 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 LPGAT1Q92604 370 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 STAMBPL1Q96FJ0 436 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 TRAPPC9Q96Q05 1148 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 PANX3Q96QZ0 392 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 OR2A14Q96R47 310 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 LNPEPQ9UIQ6 1025 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms