RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 YTHDF2Q9Y5A9 579 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TVP23AA6NH52 213 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC30A6NM36 301 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PRRG2O14669 202 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RNMTO43148 476 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UBOX5O94941 541 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CXCL14O95715 111 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CCNE1P24864 410 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CNTFP26441 200 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ATXN1P54253 815 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 BTN1A1Q13410 526 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RIPK1Q13546 671 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IL18Q14116 193 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DLG2Q15700 870 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 AP5B1Q2VPB7 878 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 EIF5AL1Q6IS14 154 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ENPP6Q6UWR7 440 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GDPD4Q6W3E5 623 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HFE2Q6ZVN8 426 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KIF18BQ86Y91 864 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HIPK1Q86Z02 1210 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM139Q8IV31 216 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A9Q8IVM8 553 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC47Q8N1G4 583 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IL17RDQ8NFM7 739 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NSMCE2Q96MF7 247 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TRNT1Q96Q11 434 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC38A2Q96QD8 506 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF607Q96SK3 696 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TRIM9Q9C026 710 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RGCCQ9H4X1 137 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 YARS2Q9Y2Z4 477 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 USP24Q9UPU5 2620 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 A0A1B0GVC2 190 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 I3L521 148 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PER2O15055 1255 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TEX33O43247 280 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHGA12O60330 932 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PIP5K1CO60331 668 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IFNA6P05013 189 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SRCP12931 536 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GOT1P17174 413 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GNALP38405 381 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADH7P40394 386 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NSDHLQ15738 373 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PCSK7Q16549 785 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DENND5BQ6ZUT9 1274 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MRPL21Q7Z2W9 205 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM129CQ86XR2 697 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LNX2Q8N448 690 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SMPDL3BQ92485 455 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NAT6Q93015 286 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NXPE2Q96DL1 559 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ULBP1Q9BZM6 244 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 COMMD4Q9H0A8 199 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GHITMQ9H3K2 345 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ATP13A3Q9H7F0 1226 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RAB21Q9UL25 225 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHA4Q9UN74 947 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHGA6Q9Y5G7 932 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KIF13BQ9NQT8 1826 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GPAA1O43292 621 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 METTL18O95568 372 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IL3RAP26951 378 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADORA1P30542 326 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SRP14P37108 136 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GRIA2P42262 883 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CLCNKAP51800 687 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC3A1Q07837 685 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CSHL1Q14406 222 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PDK1Q15118 436 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 WDR72Q3MJ13 1102 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC58Q4VC31 144 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SPDYCQ5MJ68 293 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MLIPQ5VWP3 458 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 XKRXQ6PP77 449 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PLET1Q6UQ28 207 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADAMTS18Q8TE60 1221 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM234Q8WY98 164 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RFFLQ8WZ73 363 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C18orf8Q96DM3 657 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SMARCD1Q96GM5 515 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KLHL15Q96M94 604 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 AGAP3Q96P47 875 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TASP1Q9H6P5 420 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 REEP1Q9H902 201 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ATP13A1Q9HD20 1204 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 THUMPD1Q9NXG2 353 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CACFD1Q9UGQ2 172 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 USP9YO00507 2555 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PNMA6FA0A0J9YX94 578 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PLSCR1O15162 318 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PIGNO95427 931 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CATP04040 527 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OR1E1P30953 314 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RPA3P35244 121 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF84P51523 738 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RASA2Q15283 850 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ATP6AP1LQ52LC2 224 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GPR139Q6DWJ6 353 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms