RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 AGO3Q9H9G7 860 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ANKHQ9HCJ1 492 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CD93Q9NPY3 652 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 GMIPQ9P107 970 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 C13orf42A0A1B0GVH6 325 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 PSMD10O75832 226 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CLIC3O95833 236 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 APOC3P02656 99 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 OR3A3P47888 321 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 OR3A2P47893 321 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF311Q5JNZ3 666 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 MON1BQ7L1V2 547 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ENDOVQ8N8Q3 282 aaKnown RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 B3GNT4Q9C0J1 378 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ZDHHC18Q9NUE0 388 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 EIF2B4Q9UI10 523 aaKnown RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 FAM234BA2RU67 622 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CD2P06729 351 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 THEGLP0DJG4 465 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 SRCP12931 536 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 PRKCDQ05655 676 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 C6orf89Q6UWU4 347 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 TMED4Q7Z7H5 227 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 GJD3Q8N144 294 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ACOT12Q8WYK0 555 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 TUBA1CQ9BQE3 449 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 C1orf21Q9H246 121 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 NUDT4Q9NZJ9 180 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 NEO1Q92859 1461 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 NRXN1Q9ULB1 1477 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 MYOCOSA0A1B0GUC4 107 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 MEN1O00255 615 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 HOXA2O43364 376 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 TBL1XO60907 577 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 LRCH4O75427 683 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 S100A10P60903 97 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 SAMD7Q7Z3H4 446 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 PARGQ86W56 976 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM192Q8IY95 271 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 KLHL6Q8WZ60 621 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 OR52B2Q96RD2 323 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 C1orf109Q9NX04 203 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 PRMT3O60678 531 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 KERAO60938 352 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ANXA8P13928 327 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF45Q02386 682 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 LAPTM5Q13571 262 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF572Q7Z3I7 529 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 XYLT1Q86Y38 959 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 FAM110BQ8TC76 370 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CNDP2Q96KP4 475 aaKnown RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CPXM1Q96SM3 734 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CCDC86Q9H6F5 360 aaKnown RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 NOP16Q9Y3C1 178 aaKnown RBP11.66□□□□□ -0.54
SYNPO-202ENST00000394243 H0YJX3 145 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 H3BNH8 94 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 C22orf31O95567 290 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 AXLP30530 894 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 HEPACAMQ14CZ8 416 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 SLC15A3Q8IY34 581 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CXorf40AQ8TE69 158 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 CREB3L1Q96BA8 519 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 PLEKHA1Q9HB21 404 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 KANSL3Q9P2N6 904 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 DNMT3LQ9UJW3 386 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 GPSM3Q9Y4H4 160 aa11.66□□□□□ -0.54
SYNPO-202ENST00000394243 WNT7AO00755 349 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ELK4P28324 431 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ELAVL2Q12926 359 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 HSPB3Q12988 150 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 LSAMPQ13449 338 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CAPN13Q6MZZ7 669 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 FOXR2Q6PJQ5 311 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CAND1Q86VP6 1230 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 LINC00116Q8NCU8 138 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 EXO5Q9H790 373 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 WDR6Q9NNW5 1121 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 FETUBQ9UGM5 382 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 YARS2Q9Y2Z4 477 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF705EA8MWA4 302 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CLCN4P51793 760 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CASP9P55211 416 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 VAMP2P63027 116 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF181Q2M3W8 571 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ACO2Q99798 780 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 LHX5Q9H2C1 402 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CTPS2Q9NRF8 586 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 USP31Q70CQ4 1352 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 MYLK3Q32MK0 819 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 RAB11FIP2Q7L804 512 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF598Q86UK7 904 aaKnown RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 SLC51AQ86UW1 340 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 HID1Q8IV36 788 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 SLC7A5P1Q8MH63 180 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 FGFBP2Q9BYJ0 223 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 BRINP2Q9C0B6 783 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 RANBP3Q9H6Z4 567 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-202ENST00000394243 SOHLH2Q9NX45 425 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 PCDHB1Q9Y5F3 818 aa11.65□□□□□ -0.54
SYNPO-202ENST00000394243 CCL22O00626 93 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 301.7 ms