RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ATP6V0D1P61421 351 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 PPP1R3AQ16821 1122 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ARMCX4Q5H9R4 360 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 CYP20A1Q6UW02 462 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 EFL1Q7Z2Z2 1120 aaKnown RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 GRAMD2AQ8IUY3 354 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 FSTL5Q8N475 847 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 NATD1Q8N6N6 113 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 TXNDC15Q96J42 360 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 RPL10LQ96L21 214 aaKnown RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 PBX4Q9BYU1 374 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 CIPCQ9C0C6 399 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ZNF334Q9HCZ1 680 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 EXOSC4Q9NPD3 245 aaKnown RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 CLDND1Q9NY35 253 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 MICAL3Q7RTP6 2002 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ISPDA4D126 451 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 NOBOXO60393 691 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ANXA9O76027 345 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ALX3O95076 343 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 XPAP23025 273 aaPredicted RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 GSTM2P28161 218 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 HTR7P34969 479 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ARHGDIAP52565 204 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 MLLT10P55197 1068 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 NCS1P62166 190 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SCAPQ12770 1279 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 CPSF7Q8N684 471 aaKnown RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 ZNF540Q8NDQ6 660 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 OR7D4Q8NG98 312 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 FBXO30Q8TB52 745 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 JPH3Q8WXH2 748 aaPredicted RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 PIK3R3Q92569 461 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 DOK1Q99704 481 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 INTS10Q9NVR2 710 aaKnown RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 ARMC1Q9NVT9 282 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 CRNNQ9UBG3 495 aaPredicted RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 TRHDEQ9UKU6 1024 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ANKRD6Q9Y2G4 727 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SNX8Q9Y5X2 465 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 NEMP2A6NFY4 417 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SLC9A3R1O14745 358 aaPredicted RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 STC2O76061 302 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 EPN2O95208 641 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 PGLSO95336 258 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ANGPTL1O95841 491 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 HCAR3P49019 387 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 RING1Q06587 406 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 DAG1Q14118 895 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 GRM3Q14832 879 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 ATP6AP1Q15904 470 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 RAB43Q86YS6 212 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 P3H2Q8IVL5 708 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SPARTQ8N0X7 666 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 CRIPAKQ8N1N5 446 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 NT5C3BQ969T7 300 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SLCO4A1Q96BD0 722 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 QKIQ96PU8 341 aaKnown RBP eCLIP10.71□□□□□ -0.691e-7■■■■■ 31.4
LSM3-201ENST00000306024 APOL4Q9BPW4 351 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 TTLL2Q9BWV7 592 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SLC39A8Q9C0K1 460 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 DSN1Q9H410 356 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 RIBC2Q9H4K1 309 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 SP140LQ9H930 580 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 UCKL1Q9NWZ5 548 aa10.71□□□□□ -0.69
LSM3-201ENST00000306024 UBA2Q9UBT2 640 aaPredicted RBP10.71□□□□□ -0.69
LSM3-201ENST00000306024 F5P12259 2224 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 A0A1B0GVM2 712 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 SDHDO14521 159 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 TSPAN4O14817 238 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 SEC14L2O76054 403 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 PRLP01236 227 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 HMGA1P17096 107 aaKnown RBP10.71□□□□□ -0.7
LSM3-201ENST00000306024 PRKCAP17252 672 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 GRK3P35626 688 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 MRPL28Q13084 256 aaKnown RBP10.71□□□□□ -0.7
LSM3-201ENST00000306024 PIK3R6Q5UE93 754 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 NAPEPLDQ6IQ20 393 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 RETSATQ6NUM9 610 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 PSD4Q8NDX1 1056 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 VAT1Q99536 393 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 TDP1Q9NUW8 608 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 FKBP14Q9NWM8 211 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 KIF17Q9P2E2 1029 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 ENPP5Q9UJA9 477 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 KLHL20Q9Y2M5 609 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 RALGAPA2Q2PPJ7 1873 aa10.71□□□□□ -0.7
LSM3-201ENST00000306024 MYO1GB0I1T2 1018 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 G3V2T6 193 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 YES1P07947 543 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 HNRNPA1P09651 372 aaKnown RBP eCLIP10.7□□□□□ -0.7
LSM3-201ENST00000306024 NFKB1P19838 968 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 HTR1BP28222 390 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 SLC9A3P48764 834 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 INPP1P49441 399 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 MAXP61244 160 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 LIPEQ05469 1076 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 EPS8Q12929 822 aa10.7□□□□□ -0.7
LSM3-201ENST00000306024 PPP1R8Q12972 351 aaKnown RBP10.7□□□□□ -0.7
LSM3-201ENST00000306024 GTF2H3Q13889 308 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms