RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 TMA7Q9Y2S6 64 aaKnown RBP8.17□□□□□ -1.1
PSEN1-209ENST00000553855 LAMA1P25391 3075 aa8.17□□□□□ -1.1
PSEN1-209ENST00000553855 TDRD6O60522 2096 aaKnown RBP8.17□□□□□ -1.1
PSEN1-209ENST00000553855 TRBV5-4A0A0C4DH59 114 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 LILRA5A6NI73 299 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 NTN3O00634 580 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 DNALI1O14645 258 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PPM1DO15297 605 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CD3EAPO15446 510 aaKnown RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 RRP8O43159 456 aaKnown RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 VAPBO95292 243 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CELA3AP09093 270 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 FOXN2P32314 431 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CSTF2P33240 577 aaKnown RBP eCLIP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CRADDP78560 199 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 B4GALNT1Q00973 533 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ACVR1Q04771 509 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CALCOCO2Q13137 446 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 RPA4Q13156 261 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 TRA2AQ13595 282 aaKnown RBP eCLIP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 NFE2L1Q14494 772 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 NR1D2Q14995 579 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ST3GAL2Q16842 350 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 C3orf38Q5JPI3 329 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 METRNLQ641Q3 311 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ARMC6Q6NXE6 501 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 TMEM71Q6P5X7 295 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PACS1Q6VY07 963 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 TMEM26Q6ZUK4 368 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 USP53Q70EK8 1073 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 RAB11FIP2Q7L804 512 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 HOOK3Q86VS8 718 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 LRRC6Q86X45 466 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PDIK1LQ8N165 341 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 OR13J1Q8NGT2 312 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CALML6Q8TD86 181 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ELMO1Q92556 727 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 GATA6Q92908 595 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 SLCO2A1Q92959 643 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ATXN7L3BQ96GX2 97 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 LIN37Q96GY3 246 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 SGSM3Q96HU1 749 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 C16orf45Q96MC5 204 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 C12orf66Q96MD2 445 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PANX3Q96QZ0 392 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 KRT12Q99456 494 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 NAT9Q9BTE0 207 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 KIFC1Q9BW19 673 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 CCDC68Q9H2F9 335 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PIF1Q9H611 641 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 UCK1Q9HA47 277 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 SYBUQ9NX95 663 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 SLC2A6Q9UGQ3 507 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 GNPTGQ9UJJ9 305 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 PCYT1BQ9Y5K3 369 aaPredicted RBP8.16□□□□□ -1.1
PSEN1-209ENST00000553855 ST14Q9Y5Y6 855 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 RPS6KL1Q9Y6S9 549 aa8.16□□□□□ -1.1
PSEN1-209ENST00000553855 IGLV3-16A0A075B6K0 115 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 IGHV1OR21-1A0A087WYE8 117 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 A0A096LPE4 126 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 FAM237BA0A1B0GVD1 139 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 A0A1W2PPZ6 126 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 A0A1W2PQM1 296 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 TCRBV7S3A2A0A539 114 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 UBA6A0AVT1 1052 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 A6NCN8 305 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 OR51F1A6NGY5 319 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 OR52A4PA6NMU1 304 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 EFCAB8A8MWE9 144 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 H3BMM5 538 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 PRMT5O14744 637 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 LIN7AO14910 233 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 KPNA5O15131 536 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 B4GAT1O43505 415 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 URI1O94763 535 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 UBXN7O94888 489 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 TTC4O95801 387 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 EML2O95834 649 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 RPN2P04844 631 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 MPOP05164 745 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 APOA4P06727 396 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 MTHFD1P11586 935 aaKnown RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 PSMA3P25788 255 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 NMBRP28336 390 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 CCKBRP32239 447 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 LSSP48449 732 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 ARL4DP49703 201 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 CDKN1CP49918 316 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 ARL4CP56559 192 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 PRKAA1Q13131 559 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 COL9A2Q14055 689 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 BOP1Q14137 746 aaKnown RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 RTP5Q14D33 572 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 MORF4L2Q15014 288 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 RPE65Q16518 533 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 SPRED3Q2MJR0 410 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 RPS26P11Q5JNZ5 115 aaPredicted RBP8.15□□□□□ -1.1
PSEN1-209ENST00000553855 SNAP47Q5SQN1 464 aa8.15□□□□□ -1.1
PSEN1-209ENST00000553855 NKAIN2Q5VXU1 208 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms