RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SCAMP3O14828 347 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 LPLP06858 475 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SRCP12931 536 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 IGFBP5P24593 272 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CRISP1P54107 249 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 HSPB3Q12988 150 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RFTN1Q14699 578 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ARHGAP40Q5TG30 622 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SAPCD2Q86UD0 394 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 OR6K2Q8NGY2 324 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 UFD1Q92890 307 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RAB9BQ9NP90 201 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 NINJ2Q9NZG7 142 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CIDEBQ9UHD4 219 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHGA11Q9Y5H2 935 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 FKBP7Q9Y680 259 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 TNS2Q63HR2 1409 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 NT5C1B-RDH14C9J2C7 533 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 INSIG1O15503 277 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 AHCYL1O43865 530 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 NOS1APO75052 506 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PRAMEF1O95521 474 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ANXA4P09525 319 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CYP4B1P13584 511 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GRK5P34947 590 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 UGT1A3P35503 534 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GABRB2P47870 512 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ARFRP1Q13795 201 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ADGRD2Q7Z7M1 963 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 OR10H4Q8NGA5 316 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CD99L2Q8TCZ2 262 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ING5Q8WYH8 240 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 THRSPQ92748 146 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SLC35G5Q96KT7 338 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 TCF12Q99081 682 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SEMA4AQ9H3S1 761 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 NMUR1Q9HB89 426 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CLDND1Q9NY35 253 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ABCD2Q9UBJ2 740 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 EDARQ9UNE0 448 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PARP4Q9UKK3 1724 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ELOVL7A1L3X0 281 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 DDX3YO15523 660 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 HSPA12AO43301 675 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 LGR5O75473 907 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RARAP10276 462 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RHOQP17081 205 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GADD45AP24522 165 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PRKD1Q15139 912 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SF3B4Q15427 424 aaKnown RBP eCLIP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PAOXQ6QHF9 649 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 VSIG10LQ86VR7 867 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ZMIZ2Q8NF64 920 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 OR2T12Q8NG77 320 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 DNAJB8Q8NHS0 232 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 MBOAT7Q96N66 472 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 TRMT61BQ9BVS5 477 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 BCO2Q9BYV7 579 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 INSL6Q9Y581 213 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 MRPL42Q9Y6G3 142 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 BCKDKO14874 412 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 AP2A2O94973 939 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF806P0C7X5 589 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GLRA2P23416 452 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 MAGEA2P43356 314 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 TYSND1Q2T9J0 566 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 DUSP28Q4G0W2 176 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ZC3H14Q6PJT7 736 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CRELD2Q6UXH1 353 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 OR4K2Q8NGD2 314 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 OR6K6Q8NGW6 343 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CMKLR1Q99788 373 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 C17orf62Q9BQA9 187 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GBA3Q9H227 469 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 LHX5Q9H2C1 402 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ARHGEF4Q9NR80 690 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PHLPP1O60346 1717 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 A0A0J9YYE9 177 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SEPT4O43236 478 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 LIASO43766 372 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 SYPP08247 313 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PIRTP0C851 137 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RPL10P27635 214 aaKnown RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 RFC2P35250 354 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ARRB1P49407 418 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CRADDP78560 199 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 GPR152Q8TDT2 470 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ZDHHC12Q96GR4 267 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 PAK6Q9NQU5 681 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-204ENST00000423058 AK5Q9Y6K8 562 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 CAPN6Q9Y6Q1 641 aa6.76□□□□□ -1.33
SCN1A-204ENST00000423058 ATP6AP2A0A1C7CYW4 349 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ITGA10O75578 1167 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ITGA5P08648 1049 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 WNT3AP56704 352 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 RTP1P59025 263 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 RHBDF2Q6PJF5 856 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM220Q6QAJ8 160 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZER1Q7Z7L7 766 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 AKAP14Q86UN6 197 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms