RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KIAA1522Q9P206 1035 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IKZF3Q9UKT9 509 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ABHD14A-ACY1A0A1B0GW23 586 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF726A6NNF4 738 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CYP7B1O75881 506 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HMGCRP04035 888 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 COL6A1P12109 1028 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRPS1L1P21108 318 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MSX1P28360 303 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 THBS2P35442 1172 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DGKQP52824 942 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GRM7Q14831 915 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HECTD2Q5U5R9 776 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM214Q6NUQ4 689 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NIPAL3Q6P499 406 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KCTD20Q7Z5Y7 419 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BANPQ8N9N5 519 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BSCL2Q96G97 398 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PI4K2AQ9BTU6 479 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GOLPH3Q9H4A6 298 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ABCC13Q9NSE7 274 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZFP57Q9NU63 452 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CLN6Q9NWW5 311 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EVLQ9UI08 416 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GPSM3Q9Y4H4 160 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PDCD11Q14690 1871 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PTCH1Q13635 1447 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LOC102723532A0A0G2JNH3 316 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CHST10O43529 356 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 USP12O75317 370 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ITGA10O75578 1167 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DRG2P55039 364 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CTBP2P56545 445 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GPC5P78333 572 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SCAPQ12770 1279 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF267Q14586 743 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PLCZ1Q86YW0 608 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TCTE3Q8IZS6 198 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PGAM4Q8N0Y7 254 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MCFD2Q8NI22 146 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 COL26A1Q96A83 441 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 THOC3Q96J01 351 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SCN4AP35499 1836 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2D7A0A087X1C5 515 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ADAMTS3O15072 1205 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SURF4O15260 269 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CD3GP09693 182 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FAM153BP0C7A2 387 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NDUFV2P19404 249 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IL4RP24394 825 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GNA15P30679 374 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OMPP47874 163 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SULT1E1P49888 294 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CAPZA1P52907 286 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CDH11P55287 796 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 VLDLRP98155 873 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MBTD1Q05BQ5 628 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SCN1BQ07699 218 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF844Q08AG5 666 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 USP53Q70EK8 1073 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PLXDC1Q8IUK5 500 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PROM2Q8N271 834 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TRMT61AQ96FX7 289 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NECAB3Q96P71 396 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EIF2AK1Q9BQI3 630 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BTBD10Q9BSF8 475 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HERC2P3Q9BVR0 1158 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF518BQ9C0D4 1074 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MTMR10Q9NXD2 777 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TOR4AQ9NXH8 423 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CFAP97Q9P2B7 532 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GNPTGQ9UJJ9 305 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MAN2B2Q9Y2E5 1009 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FRMPD1Q5SYB0 1578 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CLCA1A8K7I4 914 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 AGPSO00116 658 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GRM6O15303 877 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SORBS2O94875 1100 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LDLRP01130 860 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CTPS1P17812 591 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A6P19224 532 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DGKAP23743 735 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DSG3P32926 999 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HNRNPKP61978 463 aaKnown RBP eCLIP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF200P98182 395 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FMR1Q06787 632 aaKnown RBP eCLIP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SLC18A3Q16572 532 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SNAP47Q5SQN1 464 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CATSPERGQ6ZRH7 1159 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DHFR2Q86XF0 187 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC107Q8WV48 283 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HERVK_113Q902F9 699 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RPL3LQ92901 407 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RHBDF1Q96CC6 855 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GIMAP5Q96F15 307 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KCTD10Q9H3F6 313 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GRHL1Q9NZI5 618 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NAGPAQ9UK23 515 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CA5BQ9Y2D0 317 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms