RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PDHA2P29803 388 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 CCNFP41002 786 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 PREPP48147 710 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 SLC18A2Q05940 514 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 C1orf61Q13536 156 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 PPM1JQ5JR12 505 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 AGBL2Q5U5Z8 902 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 CAPRIN2Q6IMN6 1127 aaKnown RBP14.05□□□□□ -0.16
UPF1-211ENST00000600868 SLC30A9Q6PML9 568 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 LVRNQ6Q4G3 990 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 ABRAXAS1Q6UWZ7 409 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 CYHR1Q6ZMK1 362 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 TBC1D1Q86TI0 1168 aaPredicted RBP14.05□□□□□ -0.16
UPF1-211ENST00000600868 VRK3Q8IV63 474 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 LMX1AQ8TE12 382 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 EEF1AKMT1Q8WVE0 214 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 ANKRD49Q8WVL7 239 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 LINGO1Q96FE5 620 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 DERL2Q9GZP9 239 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 VPS11Q9H270 941 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 SMOC1Q9H4F8 434 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 GAREM1Q9H706 876 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 TAAR2Q9P1P5 351 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 TBC1D29Q9UFV1 150 aa14.05□□□□□ -0.16
UPF1-211ENST00000600868 ZFC3H1O60293 1989 aaKnown RBP14.05□□□□□ -0.16
UPF1-211ENST00000600868 TDRD6O60522 2096 aaKnown RBP14.05□□□□□ -0.16
UPF1-211ENST00000600868 A6NCN8 305 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 FOXO6A8MYZ6 492 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 KLHL2O95198 593 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 MATN4O95460 622 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 LTA4HP09960 611 aaKnown RBP14.04□□□□□ -0.16
UPF1-211ENST00000600868 ZNF883P0CG24 379 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 PYGBP11216 843 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 ACADLP28330 430 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 EPHA8P29322 1005 aaPredicted RBP14.04□□□□□ -0.16
UPF1-211ENST00000600868 MAPK9P45984 424 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 CCT8P50990 548 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 BNIP3Q12983 259 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 TCEA2Q15560 299 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 UAP1L1Q3KQV9 507 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 TCEAL6Q6IPX3 200 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 KANSL1Q7Z3B3 1105 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 CLEC14AQ86T13 490 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 PDZD3Q86UT5 571 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 LCA5Q86VQ0 697 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 SPNS2Q8IVW8 549 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 SRRM1Q8IYB3 904 aaKnown RBP14.04□□□□□ -0.16
UPF1-211ENST00000600868 CENPLQ8N0S6 344 aaPredicted RBP14.04□□□□□ -0.16
UPF1-211ENST00000600868 GOLGA6L1Q8N7Z2 621 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 TCEAL3Q969E4 200 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 ALKBH8Q96BT7 664 aaKnown RBP14.04□□□□□ -0.16
UPF1-211ENST00000600868 ZBTB9Q96C00 473 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 PRDM8Q9NQV8 689 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 PCMTD2Q9NV79 361 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 NCDNQ9UBB6 729 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 ACTL7BQ9Y614 415 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 VPS13AQ96RL7 3174 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 MUC6Q6W4X9 2439 aa14.04□□□□□ -0.16
UPF1-211ENST00000600868 ADAMTS9Q9P2N4 1935 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 GPR179Q6PRD1 2367 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 CCDC189A1A4V9 331 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 NEMP2A6NFY4 417 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 OR5K4A6NMS3 321 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 PDZK1P1A8MUH7 402 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 GOLGA8RI6L899 631 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 YY2O15391 372 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SNX2O60749 519 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SDC3O75056 442 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 ANXA6P08133 673 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 GSTA1P08263 222 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SLC35G4P0C7Q5 338 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 F3P13726 295 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SLC2A4P14672 509 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 KRT4P19013 534 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 RPL10P27635 214 aaKnown RBP14.03□□□□□ -0.16
UPF1-211ENST00000600868 GMPRP36959 345 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 HALP42357 657 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 ATP6V0D1P61421 351 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 IRF9Q00978 393 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 CSHL1Q14406 222 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 CSRP2Q16527 193 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 FAM83EQ2M2I3 478 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 EXOC3L1Q86VI1 746 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 MYO1HQ8N1T3 1032 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SLC25A45Q8N413 288 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 FAM46DQ8NEK8 389 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SAP25Q8TEE9 199 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 ARL8AQ96BM9 186 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 TLCD1Q96CP7 247 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 RMDN2Q96LZ7 410 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 GTPBP2Q9BX10 602 aaKnown RBP14.03□□□□□ -0.16
UPF1-211ENST00000600868 WWP1Q9H0M0 922 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 IL21RQ9HBE5 538 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 NMRAL1Q9HBL8 299 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 IGSF5Q9NSI5 407 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 SEMA4GQ9NTN9 838 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 UCKL1Q9NWZ5 548 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 DCDC2Q9UHG0 476 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 DOLKQ9UPQ8 538 aa14.03□□□□□ -0.16
UPF1-211ENST00000600868 WDR37Q9Y2I8 494 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms