RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 POP4O95707 220 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 PRKCGP05129 697 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CYP1A2P05177 515 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 UGT2B4P06133 528 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TPM3P06753 285 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CD48P09326 243 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 MYBL1P10243 752 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TNNT1P13805 278 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ERCC2P18074 760 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 HOXD12P35452 270 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 GJC1P36383 396 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 RECQLP46063 649 aaPredicted RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 SERPINH1P50454 418 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 NOVA1P51513 510 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 CCR5P51681 352 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CCNHP51946 323 aaPredicted RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 LIMK1P53667 647 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 MANFP55145 182 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 CLDN2P57739 230 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TAS2R40P59535 323 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 RAP2BP61225 183 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TBX2Q13207 712 aaPredicted RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 SEMA3BQ13214 749 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 MESDQ14696 234 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 SRSF7Q16629 238 aaKnown RBP eCLIP4.57□□□□□ -1.68
NUP54-206ENST00000508465 ASTE1Q2TB18 679 aaPredicted RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 ZNF284Q2VY69 593 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CCDC157Q569K6 752 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ZNF542PQ5EBM4 170 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 PIP5KL1Q5T9C9 394 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 FAM46CQ5VWP2 391 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 SEL1L3Q68CR1 1132 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ZNF425Q6IV72 752 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 C22orf39Q6P5X5 142 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 KDM7AQ6ZMT4 941 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TTC7BQ86TV6 843 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 PRPF39Q86UA1 669 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 VPS36Q86VN1 386 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 MARCH9Q86YJ5 346 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 LYSMD2Q8IV50 215 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ARHGAP12Q8IWW6 846 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 UMODL1-AS1Q8N2C9 162 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.57□□□□□ -1.68
NUP54-206ENST00000508465 PNPLA1Q8N8W4 532 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TMIEQ8NEW7 156 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 NSMCE3Q96MG7 304 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 KLHL32Q96NJ5 620 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 KRTAP1-5Q9BYS1 174 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 LRRC19Q9H756 370 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CATSPERBQ9H7T0 1116 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 NHEJ1Q9H9Q4 299 aaPredicted RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 MRPL47Q9HD33 250 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 FZD3Q9NPG1 666 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 DYRK4Q9NR20 520 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.57□□□□□ -1.68
NUP54-206ENST00000508465 TMEM51Q9NW97 253 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ZNHIT6Q9NWK9 470 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 KCTD5Q9NXV2 234 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CTTNBP2NLQ9P2B4 639 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ANAPC7Q9UJX3 599 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 FZD4Q9ULV1 537 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 SCML1Q9UN30 329 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 TFR2Q9UP52 801 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 ITM2BQ9Y287 266 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 BTBD3Q9Y2F9 522 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 MTO1Q9Y2Z2 717 aaKnown RBP4.57□□□□□ -1.68
NUP54-206ENST00000508465 HYOU1Q9Y4L1 999 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 SCINQ9Y6U3 715 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 FREM2Q5SZK8 3169 aa4.57□□□□□ -1.68
NUP54-206ENST00000508465 CKAP5Q14008 2032 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 ZZEF1O43149 2961 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 ASCC3Q8N3C0 2202 aaKnown RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 A0A1W2PPC4 97 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 A0A1W2PR77 199 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 AKR1B15C9JRZ8 316 aaPredicted RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 TLR4O00206 839 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 NEMP1O14524 444 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 RAD51BO15315 384 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 PLRG1O43660 514 aaKnown RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 PRAMEF11O60813 436 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 PALMO75781 387 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 PIGNO95427 931 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 PAK4O96013 591 aaPredicted RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 TPM1P09493 284 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 H2AFZP0C0S5 128 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 HOXB6P17509 224 aaKnown RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 DESP17661 470 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 IL4RP24394 825 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 HNRNPH3P31942 346 aaKnown RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 PCK1P35558 622 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 RGRP47804 291 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 SCNN1BP51168 640 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 NDST2P52849 883 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 CDH6P55285 790 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 C21orf59P57076 290 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 YBEYP58557 167 aaPredicted RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 RHOAP61586 193 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 DPYSQ14117 519 aa4.56□□□□□ -1.68
NUP54-206ENST00000508465 TRIM25Q14258 630 aaKnown RBP4.56□□□□□ -1.68
NUP54-206ENST00000508465 FGL2Q14314 439 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms