RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SEMA3CQ99985 751 aa8.8□□□□□ -1
VCL-206ENST00000623461 MTMR10Q9NXD2 777 aa8.8□□□□□ -1
VCL-206ENST00000623461 CNTN3Q9P232 1028 aa8.8□□□□□ -1
VCL-206ENST00000623461 ALG5Q9Y673 324 aa8.8□□□□□ -1
VCL-206ENST00000623461 C1orf167Q5SNV9 1468 aa8.79□□□□□ -1
VCL-206ENST00000623461 L7N2F9 121 aa8.79□□□□□ -1
VCL-206ENST00000623461 CLDN9O95484 217 aa8.79□□□□□ -1
VCL-206ENST00000623461 CD48P09326 243 aa8.79□□□□□ -1
VCL-206ENST00000623461 HOXC6P09630 235 aa8.79□□□□□ -1
VCL-206ENST00000623461 CYP3A5P20815 502 aa8.79□□□□□ -1
VCL-206ENST00000623461 LCN1P31025 176 aa8.79□□□□□ -1
VCL-206ENST00000623461 MAPK9P45984 424 aa8.79□□□□□ -1
VCL-206ENST00000623461 CSTF1Q05048 431 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 NFATC3Q12968 1075 aa8.79□□□□□ -1
VCL-206ENST00000623461 PCBP1Q15365 356 aaKnown RBP eCLIP8.79□□□□□ -12e-14■■■□□ 15.9
VCL-206ENST00000623461 TFB2MQ9H5Q4 396 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 SLC35C2Q9NQQ7 365 aa8.79□□□□□ -1
VCL-206ENST00000623461 PRDM5Q9NQX1 630 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 CCM2LQ9NUG4 571 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 TAS2R9Q9NYW1 312 aa8.79□□□□□ -1
VCL-206ENST00000623461 N4BP2Q86UW6 1770 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 CHURC1-FNTBB4DL54 471 aa8.79□□□□□ -1
VCL-206ENST00000623461 hCG_2039718K7EN88 272 aa8.79□□□□□ -1
VCL-206ENST00000623461 CHP2O43745 196 aa8.79□□□□□ -1
VCL-206ENST00000623461 ENTPD6O75354 484 aa8.79□□□□□ -1
VCL-206ENST00000623461 GADD45GO95257 159 aa8.79□□□□□ -1
VCL-206ENST00000623461 CCNDBP1O95273 360 aa8.79□□□□□ -1
VCL-206ENST00000623461 RPS3P23396 243 aaKnown RBP eCLIP8.79□□□□□ -15e-7■■■■□ 19.7
VCL-206ENST00000623461 GSTM2P28161 218 aa8.79□□□□□ -1
VCL-206ENST00000623461 GTF2E2P29084 291 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 CD40LGP29965 261 aa8.79□□□□□ -1
VCL-206ENST00000623461 GRIA1P42261 906 aa8.79□□□□□ -1
VCL-206ENST00000623461 GSK3BP49841 420 aa8.79□□□□□ -1
VCL-206ENST00000623461 CTXN3Q4LDR2 81 aa8.79□□□□□ -1
VCL-206ENST00000623461 IDNKQ5T6J7 187 aa8.79□□□□□ -1
VCL-206ENST00000623461 GPALPP1Q8IXQ4 340 aa8.79□□□□□ -1
VCL-206ENST00000623461 AGBL3Q8NEM8 1001 aa8.79□□□□□ -1
VCL-206ENST00000623461 BSNDQ8WZ55 320 aa8.79□□□□□ -1
VCL-206ENST00000623461 KLHL6Q8WZ60 621 aa8.79□□□□□ -1
VCL-206ENST00000623461 MFSD3Q96ES6 412 aa8.79□□□□□ -1
VCL-206ENST00000623461 MSANTD3Q96H12 275 aa8.79□□□□□ -1
VCL-206ENST00000623461 ZNHIT2Q9UHR6 403 aa8.79□□□□□ -1
VCL-206ENST00000623461 GPN3Q9UHW5 284 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 PITPNM1O00562 1244 aa8.79□□□□□ -1
VCL-206ENST00000623461 NKRFO15226 690 aaKnown RBP eCLIP8.79□□□□□ -1
VCL-206ENST00000623461 OR2B3O76000 313 aa8.79□□□□□ -1
VCL-206ENST00000623461 ZNF10P21506 573 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 ARFIP1P53367 373 aa8.79□□□□□ -1
VCL-206ENST00000623461 GTF2H2Q13888 395 aa8.79□□□□□ -1
VCL-206ENST00000623461 TMEM198Q66K66 360 aa8.79□□□□□ -1
VCL-206ENST00000623461 ZNF280DQ6N043 979 aa8.79□□□□□ -1
VCL-206ENST00000623461 GTF2H2CQ6P1K8 395 aa8.79□□□□□ -1
VCL-206ENST00000623461 CHSY3Q70JA7 882 aa8.79□□□□□ -1
VCL-206ENST00000623461 ACOT12Q8WYK0 555 aa8.79□□□□□ -1
VCL-206ENST00000623461 TXLNGYQ9BZA5 131 aa8.79□□□□□ -1
VCL-206ENST00000623461 CHIAQ9BZP6 476 aa8.79□□□□□ -1
VCL-206ENST00000623461 SEMA3GQ9NS98 782 aa8.79□□□□□ -1
VCL-206ENST00000623461 PXDNQ92626 1479 aa8.79□□□□□ -1
VCL-206ENST00000623461 IFNA6P05013 189 aa8.79□□□□□ -1
VCL-206ENST00000623461 CDK4P11802 303 aa8.79□□□□□ -1
VCL-206ENST00000623461 INSRRP14616 1297 aa8.79□□□□□ -1
VCL-206ENST00000623461 ECHS1P30084 290 aa8.79□□□□□ -1
VCL-206ENST00000623461 ARSFP54793 590 aa8.79□□□□□ -1
VCL-206ENST00000623461 CDH12P55289 794 aa8.79□□□□□ -1
VCL-206ENST00000623461 SMARCB1Q12824 385 aa8.79□□□□□ -1
VCL-206ENST00000623461 ZNF234Q14588 700 aa8.79□□□□□ -1
VCL-206ENST00000623461 MEP1AQ16819 746 aa8.79□□□□□ -1
VCL-206ENST00000623461 OR2T5Q6IEZ7 315 aa8.79□□□□□ -1
VCL-206ENST00000623461 CCSAPQ6IQ19 270 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 LIX1Q8N485 282 aa8.79□□□□□ -1
VCL-206ENST00000623461 OR2T29Q8NH02 315 aa8.79□□□□□ -1
VCL-206ENST00000623461 DENND1AQ8TEH3 1009 aa8.79□□□□□ -1
VCL-206ENST00000623461 XKR8Q9H6D3 395 aa8.79□□□□□ -1
VCL-206ENST00000623461 INTS7Q9NVH2 962 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 MAGEB17A8MXT2 336 aa8.79□□□□□ -1
VCL-206ENST00000623461 NMBRP28336 390 aa8.79□□□□□ -1
VCL-206ENST00000623461 MTPNP58546 118 aa8.79□□□□□ -1
VCL-206ENST00000623461 RPA4Q13156 261 aa8.79□□□□□ -1
VCL-206ENST00000623461 ITPK1Q13572 414 aa8.79□□□□□ -1
VCL-206ENST00000623461 PCLAFQ15004 111 aa8.79□□□□□ -1
VCL-206ENST00000623461 PPP1R26Q5T8A7 1209 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 PNCKQ6P2M8 343 aa8.79□□□□□ -1
VCL-206ENST00000623461 SRFBP1Q8NEF9 429 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 BIRC7Q96CA5 298 aa8.79□□□□□ -1
VCL-206ENST00000623461 TSSK3Q96PN8 268 aa8.79□□□□□ -1
VCL-206ENST00000623461 MRPL45Q9BRJ2 306 aaKnown RBP8.79□□□□□ -1
VCL-206ENST00000623461 DUSP16Q9BY84 665 aa8.79□□□□□ -1
VCL-206ENST00000623461 ACSS2Q9NR19 701 aa8.79□□□□□ -1
VCL-206ENST00000623461 CUEDC1Q9NWM3 386 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 C1orf109Q9NX04 203 aa8.79□□□□□ -1
VCL-206ENST00000623461 ZDHHC2Q9UIJ5 367 aa8.79□□□□□ -1
VCL-206ENST00000623461 ENDOD1O94919 500 aa8.79□□□□□ -1
VCL-206ENST00000623461 LDOC1O95751 146 aaPredicted RBP8.79□□□□□ -1
VCL-206ENST00000623461 HIST1H2ABP04908 130 aa8.79□□□□□ -1
VCL-206ENST00000623461 COL6A1P12109 1028 aa8.79□□□□□ -1
VCL-206ENST00000623461 MATN1P21941 496 aa8.79□□□□□ -1
VCL-206ENST00000623461 SERPINA4P29622 427 aa8.79□□□□□ -1
VCL-206ENST00000623461 TNFSF9P41273 254 aa8.79□□□□□ -1
VCL-206ENST00000623461 HIST3H2AQ7L7L0 130 aa8.79□□□□□ -1
VCL-206ENST00000623461 TOMM5Q8N4H5 51 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms