RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 NR6A1Q15406 480 aa18.8■□□□□ 0.6
SDCBP-204ENST00000447182 HABP4Q5JVS0 413 aaKnown RBP18.8■□□□□ 0.6
SDCBP-204ENST00000447182 GRAMD4Q6IC98 578 aa18.8■□□□□ 0.6
SDCBP-204ENST00000447182 FAM43BQ6ZT52 329 aaPredicted RBP18.8■□□□□ 0.6
SDCBP-204ENST00000447182 ZNF548Q8NEK5 533 aaPredicted RBP18.8■□□□□ 0.6
SDCBP-204ENST00000447182 ZNF555Q8NEP9 628 aa18.8■□□□□ 0.6
SDCBP-204ENST00000447182 PDLIM5Q96HC4 596 aaKnown RBP18.8■□□□□ 0.6
SDCBP-204ENST00000447182 CINPQ9BW66 212 aaPredicted RBP18.8■□□□□ 0.6
SDCBP-204ENST00000447182 RETREG1Q9H6L5 497 aa18.8■□□□□ 0.6
SDCBP-204ENST00000447182 PDE10AQ9Y233 779 aa18.8■□□□□ 0.6
SDCBP-204ENST00000447182 GREB1Q4ZG55 1949 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 TMEM189-UBE2V1I3L0A0 370 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 B4GALT3O60512 393 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 IL7RP16871 459 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 MC4RP32245 332 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 THPOP40225 353 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 GSTM4Q03013 218 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 GNA12Q03113 381 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 BFSP2Q13515 415 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 AP5B1Q2VPB7 878 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 NIPAL1Q6NVV3 410 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 GALNT18Q6P9A2 607 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 FAM86B1Q8N7N1 296 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 RBM4BQ9BQ04 359 aaKnown RBP18.79■□□□□ 0.6
SDCBP-204ENST00000447182 C17orf80Q9BSJ5 609 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 ZBED2Q9BTP6 218 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 RBM4Q9BWF3 364 aaKnown RBP18.79■□□□□ 0.6
SDCBP-204ENST00000447182 AMBRA1Q9C0C7 1298 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 VAPAQ9P0L0 249 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 ACTL7AQ9Y615 435 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 DNAH12Q6ZR08 3092 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 F5H5T6 163 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 J3QRK9 145 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 OR7A17O14581 309 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 CST1P01037 141 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 ESR1P03372 595 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 NKG7Q16617 165 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 RGS21Q2M5E4 152 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 RFTN2Q52LD8 501 aaPredicted RBP18.79■□□□□ 0.6
SDCBP-204ENST00000447182 ENPP6Q6UWR7 440 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 GOLGA7Q7Z5G4 137 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 SLC13A3Q8WWT9 602 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 MUL1Q969V5 352 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 FBXL8Q96CD0 374 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 PPP3R2Q96LZ3 170 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 UBA2Q9UBT2 640 aaPredicted RBP18.79■□□□□ 0.6
SDCBP-204ENST00000447182 FKBPLQ9UIM3 349 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 NAALAD2Q9Y3Q0 740 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 CCL27Q9Y4X3 112 aa18.79■□□□□ 0.6
SDCBP-204ENST00000447182 POLR3HQ9Y535 204 aaPredicted RBP18.79■□□□□ 0.6
SDCBP-204ENST00000447182 H7C0S8 307 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 DFNA5O60443 496 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 MSH3P20585 1137 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 MLLT10P55197 1068 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 DSC1Q08554 894 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 TAF10Q12962 218 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 SMU1Q2TAY7 513 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 LGI2Q8N0V4 545 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 OR7D4Q8NG98 312 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 OR4F6Q8NGB9 312 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 GPR152Q8TDT2 470 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 GIPC2Q8TF65 315 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 FIG4Q92562 907 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 SGCDQ92629 289 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 GTF2H4Q92759 462 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 SMURF2Q9HAU4 748 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 ADGRE2Q9UHX3 823 aa18.78■□□□□ 0.6
SDCBP-204ENST00000447182 C1orf232A0A0U1RR37 186 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 E5RI56 91 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 GSTA4O15217 222 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 SERPINB7O75635 380 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 OTCP00480 354 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ITIH1P19827 911 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 PIGAP37287 484 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 PTGER3P43115 390 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CLCN7P51798 805 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 KPNA1P52294 538 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-204ENST00000447182 GTF2H2Q13888 395 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 GTF2H2CQ6P1K8 395 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 SLC16A12Q6ZSM3 486 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ADAMTSL2Q86TH1 951 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ZNF280BQ86YH2 543 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 TTC9BQ8N6N2 239 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 SLC47A1Q96FL8 570 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ZNF347Q96SE7 839 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 FUNDC2Q9BWH2 189 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 KDELR3O43731 214 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 SCELO95171 688 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 TPD52P55327 224 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CYP4F3Q08477 520 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CD47Q08722 323 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 TRAF3Q13114 568 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ABRAXAS2Q15018 415 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 MEP1AQ16819 746 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CTU2Q2VPK5 515 aaKnown RBP18.77■□□□□ 0.6
SDCBP-204ENST00000447182 RNF165Q6ZSG1 346 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 RNF168Q8IYW5 571 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CFAP52Q8N1V2 620 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 CARNMT1Q8N4J0 409 aa18.77■□□□□ 0.6
SDCBP-204ENST00000447182 ATAD1Q8NBU5 361 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms