RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 JAK1P23458 1154 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 ARL1P40616 181 aaPredicted RBP15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 NUP107P57740 925 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 OR4D2P58180 307 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 PTPRRQ15256 657 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 AP5B1Q2VPB7 878 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 LINGO4Q6UY18 593 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 USP51Q70EK9 711 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 GOLGA7Q7Z5G4 137 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 FAM126BQ8IXS8 530 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 DBF4BQ8NFT6 615 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 OR4F6Q8NGB9 312 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 GPR63Q9BZJ6 419 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 ACTL8Q9H568 366 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 TRPM5Q9NZQ8 1165 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 LRFN2Q9ULH4 789 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 PCDHB9Q9Y5E1 797 aa15.8■□□□□ 0.12
CHMP1A-202ENST00000535997 RAD51BO15315 384 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 FFAR2O15552 330 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 SELPP16109 830 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 ZNF7P17097 686 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 MSH3P20585 1137 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PWP1Q13610 501 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CRY1Q16526 586 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 TMEM173Q86WV6 379 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 RALGPS2Q86X27 583 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PDPRQ8NCN5 879 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 FAM81AQ8TBF8 368 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 FBXL20Q96IG2 436 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CGREF1Q99674 301 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PIF1Q9H611 641 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 IPPKQ9H8X2 491 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 HCSTQ9UBK5 93 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CASP8AP2Q9UKL3 1982 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 ADAM12O43184 909 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 HMGA1P17096 107 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 SOX11P35716 441 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 ADARB1P78563 741 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 NR6A1Q15406 480 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 RFTN2Q52LD8 501 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 HABP4Q5JVS0 413 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 MILR1Q7Z6M3 343 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CLVS1Q8IUQ0 354 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CARNMT1Q8N4J0 409 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 DRAXINQ8NBI3 349 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 OR8J3Q8NGG0 315 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 EID2BQ96D98 161 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PPP3R2Q96LZ3 170 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PPM1MQ96MI6 270 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 TSEN34Q9BSV6 310 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 NPLQ9BXD5 320 aaPredicted RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 MRPL9Q9BYD2 267 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CIPCQ9C0C6 399 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CLPBQ9H078 707 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 RNF38Q9H0F5 515 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 LIN28AQ9H9Z2 209 aaKnown RBP15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 RNF186Q9NXI6 227 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 PKD2L2Q9NZM6 624 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 LHX3Q9UBR4 397 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 CIDEBQ9UHD4 219 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 USP22Q9UPT9 525 aa15.79■□□□□ 0.12
CHMP1A-202ENST00000535997 HOXA2O43364 376 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 NBNO60934 754 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 DEAF1O75398 565 aaPredicted RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 PRSS23O95084 383 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 SNAP29O95721 258 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 CLIC3O95833 236 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 GLUD1P00367 558 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 RPS3P23396 243 aaKnown RBP eCLIP15.78■□□□□ 0.123e-6■■■■□ 19.8
CHMP1A-202ENST00000535997 OR1D2P34982 312 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 ABRAXAS2Q15018 415 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 SMU1Q2TAY7 513 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 PTRHD1Q6GMV3 140 aaKnown RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 DHRS4L2Q6PKH6 230 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 GPR180Q86V85 440 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 ISOC1Q96CN7 298 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 VPS50Q96JG6 964 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 C19orf43Q9BQ61 176 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 STOML2Q9UJZ1 356 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 A0A0U1RQS6 177 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 GMNNO75496 209 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 PRAMEF12O95522 483 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 RAP2AP10114 183 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 VARSP26640 1264 aaKnown RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 RGS4P49798 205 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 HTR6P50406 440 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 RHOAP61586 193 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 FAM98BQ52LJ0 330 aaKnown RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 NPAS4Q8IUM7 802 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 HOMEZQ8IX15 550 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 DTWD1Q8N5C7 304 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 ZNF420Q8TAQ5 688 aaPredicted RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 PNPT1Q8TCS8 783 aaKnown RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 ZIC5Q96T25 663 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 FEM1AQ9BSK4 669 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 KLF16Q9BXK1 252 aaPredicted RBP15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 HIPK3Q9H422 1215 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 GORASP2Q9H8Y8 452 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 CXorf21Q9HAI6 301 aa15.78■□□□□ 0.12
CHMP1A-202ENST00000535997 NTN4Q9HB63 628 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms