RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CRYL1Q9Y2S2 319 aa13.44□□□□□ -0.26
VMP1-210ENST00000589823 PRKAB1Q9Y478 270 aa13.44□□□□□ -0.26
VMP1-210ENST00000589823 PCDHB1Q9Y5F3 818 aa13.44□□□□□ -0.26
VMP1-210ENST00000589823 PLXNB3Q9ULL4 1909 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 H3BMM5 538 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 SCAMP1O15126 338 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 YKT6O15498 198 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 FOXD2O60548 495 aaPredicted RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 HAUS5O94927 633 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 FTH1P02794 183 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 FUCA1P04066 466 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 RPS3P23396 243 aaKnown RBP eCLIP13.43□□□□□ -0.26
VMP1-210ENST00000589823 RXRGP48443 463 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 CD151P48509 253 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 CTSCP53634 463 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 EIF3BP55884 814 aaKnown RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 ILF2Q12905 390 aaKnown RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 BRD3Q15059 726 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 SF3A2Q15428 464 aaKnown RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 CSRP2Q16527 193 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 INSCQ1MX18 579 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 KLHL38Q2WGJ6 581 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 KBTBD12Q3ZCT8 623 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 PRAMEF14Q5SWL7 426 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 KCTD16Q68DU8 428 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 CHST15Q7LFX5 561 aaPredicted RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 STRA8Q7Z7C7 330 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 GALNT7Q86SF2 657 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 CLDN19Q8N6F1 224 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 LPGAT1Q92604 370 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 CCDC97Q96F63 343 aaPredicted RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 FUT8Q9BYC5 575 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 P2RY12Q9H244 342 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 ACSS3Q9H6R3 686 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 SMYD2Q9NRG4 433 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 TRNAU1APQ9NX07 287 aaKnown RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 SPASTQ9UBP0 616 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 KLF15Q9UIH9 416 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 RABGEF1Q9UJ41 708 aa13.43□□□□□ -0.26
VMP1-210ENST00000589823 PNMA8BQ9ULN7 279 aaPredicted RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 DNMT3AQ9Y6K1 912 aaPredicted RBP13.43□□□□□ -0.26
VMP1-210ENST00000589823 BPTFQ12830 3046 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 A0A1B0GTQ1 180 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 LNP1A1A4G5 178 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 KLHL33A6NCF5 533 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 CXorf49A8MYA2 514 aaPredicted RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 POP7O75817 140 aaKnown RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 AHSGP02765 367 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 ESR1P03372 595 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 GSTM1P09488 218 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PKMP14618 531 aaKnown RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 VCLP18206 1134 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PBLDP30039 288 aaPredicted RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 FMO4P31512 558 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PRLHRP49683 370 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 CCT8P50990 548 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 ADARP55265 1226 aaKnown RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 GSTM4Q03013 218 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 ILF3Q12906 894 aaKnown RBP eCLIP13.42□□□□□ -0.26
VMP1-210ENST00000589823 LRP8Q14114 963 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 SLC29A2Q14542 456 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PLA2G4EQ3MJ16 856 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PRRT3Q5FWE3 981 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 ZNF789Q5FWF6 425 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 UBAP2Q5T6F2 1119 aaKnown RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 CNSTQ6PJW8 725 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 FSTL5Q8N475 847 aaPredicted RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 MINDY1Q8N5J2 469 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 LMX1AQ8TE12 382 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 NAT14Q8WUY8 206 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PANX3Q96QZ0 392 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PHOX2BQ99453 314 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 CPNE1Q99829 537 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 CCDC77Q9BR77 488 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 TIMM29Q9BSF4 260 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 TMEM168Q9H0V1 697 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 TCEAL2Q9H3H9 227 aaPredicted RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 CORO1CQ9ULV4 474 aaPredicted RBP13.42□□□□□ -0.26
VMP1-210ENST00000589823 COMMD10Q9Y6G5 202 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 IKBKGQ9Y6K9 419 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 PRSS21Q9Y6M0 314 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 VPS13AQ96RL7 3174 aa13.42□□□□□ -0.26
VMP1-210ENST00000589823 CCDC151A5D8V7 595 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 E5RI56 91 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 AQP9O43315 295 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 SGTAO43765 313 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 KCNJ13O60928 360 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 PIAS1O75925 651 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 PIAS2O75928 621 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 C1QAP02745 245 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 F7P08709 466 aaPredicted RBP13.41□□□□□ -0.26
VMP1-210ENST00000589823 ACP5P13686 325 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 GP5P40197 560 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 CSE1LP55060 971 aaKnown RBP13.41□□□□□ -0.26
VMP1-210ENST00000589823 IL9RQ01113 521 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 CTBSQ01459 385 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 C1orf61Q13536 156 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 EFTUD2Q15029 972 aaKnown RBP eCLIP13.41□□□□□ -0.26
VMP1-210ENST00000589823 ELOCQ15369 112 aa13.41□□□□□ -0.26
VMP1-210ENST00000589823 AASDHQ4L235 1098 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms