RNA–Protein interactions for RNA: YKR094C

RPL40B, Transcript of Ubiquitin-ribosomal 60S subunit protein L40B fusion protein, yeast

Gene RPL40B, Length 387 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL40B	YKR094C	NOG1	Q02892	647 aa	Known RBP	4.67	□□□□□ -1.66
RPL40B	YKR094C	CLU1	Q03690	1277 aa	Known RBP	4.67	□□□□□ -1.66
RPL40B	YKR094C	MSH3	P25336	1018 aa		4.66	□□□□□ -1.66
RPL40B	YKR094C	YNR063W	P53749	607 aa		4.66	□□□□□ -1.66
RPL40B	YKR094C	YCS4	Q06156	1176 aa		4.66	□□□□□ -1.66
RPL40B	YKR094C	NUT2	Q06213	157 aa		4.66	□□□□□ -1.66
RPL40B	YKR094C	HRK1	Q08732	759 aa	Known RBP	4.66	□□□□□ -1.66
RPL40B	YKR094C	CTS1	P29029	562 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	UGA4	P32837	571 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	HSE1	P38753	452 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	PEX13	P80667	386 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
RPL40B	YKR094C	GIS1	Q03833	894 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	RLF2	Q12495	606 aa		4.65	□□□□□ -1.67
RPL40B	YKR094C	ABZ1	P37254	787 aa	Predicted RBP	4.64	□□□□□ -1.67
RPL40B	YKR094C	SHM2	P37291	469 aa	Known RBP	4.64	□□□□□ -1.67
RPL40B	YKR094C	SAM37	P50110	327 aa		4.64	□□□□□ -1.67
RPL40B	YKR094C	LAP2	Q10740	671 aa		4.64	□□□□□ -1.67
RPL40B	YKR094C	YBL113C	Q7M4S9	792 aa		4.64	□□□□□ -1.67
RPL40B	YKR094C	YLR358C	O13565	187 aa		4.63	□□□□□ -1.67
RPL40B	YKR094C	SRO9	P25567	434 aa	Known RBP	4.63	□□□□□ -1.67
RPL40B	YKR094C	GSF2	Q04697	403 aa	Known RBP	4.63	□□□□□ -1.67
RPL40B	YKR094C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
RPL40B	YKR094C	ATG14	P38270	344 aa		4.62	□□□□□ -1.67
RPL40B	YKR094C	CIC1	P38779	376 aa	Known RBP	4.62	□□□□□ -1.67
RPL40B	YKR094C	QNS1	P38795	714 aa	Known RBP	4.62	□□□□□ -1.67
RPL40B	YKR094C	RSM26	P47141	266 aa		4.62	□□□□□ -1.67
RPL40B	YKR094C	RSC58	Q07979	502 aa		4.62	□□□□□ -1.67
RPL40B	YKR094C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
RPL40B	YKR094C	SPS1	P08458	490 aa		4.61	□□□□□ -1.67
RPL40B	YKR094C	YDR132C	Q03900	495 aa		4.61	□□□□□ -1.67
RPL40B	YKR094C	TUB2	P02557	457 aa	Known RBP	4.6	□□□□□ -1.67
RPL40B	YKR094C	VMA4	P22203	233 aa	Known RBP	4.6	□□□□□ -1.67
RPL40B	YKR094C	YSC84	P32793	468 aa		4.6	□□□□□ -1.67
RPL40B	YKR094C	PRP40	P33203	583 aa	Known RBP	4.6	□□□□□ -1.67
RPL40B	YKR094C	SPT20	P50875	604 aa		4.6	□□□□□ -1.67
RPL40B	YKR094C	RCL1	Q08096	367 aa	Predicted RBP	4.6	□□□□□ -1.67
RPL40B	YKR094C	CDC3	P32457	520 aa	Known RBP	4.59	□□□□□ -1.67
RPL40B	YKR094C	SQT1	P35184	431 aa		4.59	□□□□□ -1.67
RPL40B	YKR094C	PEX28	P38848	579 aa		4.59	□□□□□ -1.67
RPL40B	YKR094C	ULP1	Q02724	621 aa		4.59	□□□□□ -1.67
RPL40B	YKR094C	NBA1	Q08229	501 aa	Known RBP	4.59	□□□□□ -1.67
RPL40B	YKR094C	SSA1	P10591	642 aa	Known RBP	4.58	□□□□□ -1.68
RPL40B	YKR094C	DAL4	Q04895	635 aa		4.58	□□□□□ -1.68
RPL40B	YKR094C	SGD1	Q06132	899 aa		4.58	□□□□□ -1.68
RPL40B	YKR094C	YOR352W	Q08816	343 aa		4.58	□□□□□ -1.68
RPL40B	YKR094C	HAT1	Q12341	374 aa		4.58	□□□□□ -1.68
RPL40B	YKR094C	ADD66	P36040	267 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	RDH54	P38086	958 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	LAM1	P38851	1228 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	TAT2	P38967	592 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
RPL40B	YKR094C	GPB2	P39717	880 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	VPS53	P47061	822 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	GCN5	Q03330	439 aa		4.57	□□□□□ -1.68
RPL40B	YKR094C	CYC1	P00044	109 aa	Predicted RBP	4.56	□□□□□ -1.68
RPL40B	YKR094C	HEM13	P11353	328 aa	Known RBP	4.56	□□□□□ -1.68
RPL40B	YKR094C	MEF2	P39677	819 aa		4.56	□□□□□ -1.68
RPL40B	YKR094C	RKM2	Q03942	479 aa		4.56	□□□□□ -1.68
RPL40B	YKR094C	PNS1	Q12412	539 aa		4.56	□□□□□ -1.68
RPL40B	YKR094C	COQ4	O13525	335 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	KIP1	P28742	1111 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	AFG2	P32794	780 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	YGL140C	P53120	1219 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	ENV11	P53246	860 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	ROT1	Q03691	256 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	TOS4	Q06266	489 aa		4.55	□□□□□ -1.68
RPL40B	YKR094C	PHO4	P07270	312 aa	Known RBP	4.54	□□□□□ -1.68
RPL40B	YKR094C	KAR2	P16474	682 aa	Known RBP	4.54	□□□□□ -1.68
RPL40B	YKR094C	CCZ1	P38273	704 aa		4.54	□□□□□ -1.68
RPL40B	YKR094C	SPO21	Q12411	609 aa		4.54	□□□□□ -1.68
RPL40B	YKR094C	GCD6	P32501	712 aa	Known RBP	4.53	□□□□□ -1.68
RPL40B	YKR094C	VPS35	P34110	944 aa		4.53	□□□□□ -1.68
RPL40B	YKR094C	PLB2	Q03674	706 aa		4.53	□□□□□ -1.68
RPL40B	YKR094C	TAD3	Q9URQ3	322 aa		4.53	□□□□□ -1.68
RPL40B	YKR094C	BAP2	P38084	609 aa		4.52	□□□□□ -1.69
RPL40B	YKR094C	YHL050C	P38721	697 aa		4.52	□□□□□ -1.69
RPL40B	YKR094C	YHR219W	P38900	624 aa		4.52	□□□□□ -1.69
RPL40B	YKR094C	SEC26	P41810	973 aa	Known RBP	4.52	□□□□□ -1.69
RPL40B	YKR094C	EST2	Q06163	884 aa		4.52	□□□□□ -1.69
RPL40B	YKR094C	DED1	P06634	604 aa	Known RBP	4.51	□□□□□ -1.69
RPL40B	YKR094C	DAK2	P43550	591 aa		4.51	□□□□□ -1.69
RPL40B	YKR094C	TNA1	P53322	534 aa		4.51	□□□□□ -1.69
RPL40B	YKR094C	HOS3	Q02959	697 aa	Known RBP	4.51	□□□□□ -1.69
RPL40B	YKR094C	DUS4	Q06063	367 aa		4.51	□□□□□ -1.69
RPL40B	YKR094C	RSB1	Q08417	382 aa		4.51	□□□□□ -1.69
RPL40B	YKR094C	PTC5	Q12511	572 aa		4.51	□□□□□ -1.69
RPL40B	YKR094C	SEC23	P15303	768 aa	Known RBP	4.5	□□□□□ -1.69
RPL40B	YKR094C	SNF5	P18480	905 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
RPL40B	YKR094C	ALG3	P38179	458 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	HNT2	P49775	206 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	YPL109C	Q02981	657 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	ADI1	Q03677	179 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	PUS9	Q12069	462 aa		4.5	□□□□□ -1.69
RPL40B	YKR094C	GAL10	P04397	699 aa		4.49	□□□□□ -1.69
RPL40B	YKR094C	MET4	P32389	672 aa		4.49	□□□□□ -1.69
RPL40B	YKR094C	TRM2	P33753	639 aa		4.49	□□□□□ -1.69
RPL40B	YKR094C	FAA3	P39002	694 aa		4.49	□□□□□ -1.69
RPL40B	YKR094C	PIK1	P39104	1066 aa		4.49	□□□□□ -1.69

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