RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C SEC23P15303 768 aaKnown RBP2.47□□□□□ -2.01
UFD4YKL010C BUD16P39988 312 aa2.47□□□□□ -2.01
UFD4YKL010C RPA14P50106 137 aa2.47□□□□□ -2.01
UFD4YKL010C RAT1Q02792 1006 aaKnown RBP2.47□□□□□ -2.01
UFD4YKL010C UBX2Q04228 584 aa2.47□□□□□ -2.01
UFD4YKL010C COG4Q06096 861 aa2.47□□□□□ -2.01
UFD4YKL010C LCB5Q06147 687 aaKnown RBP2.47□□□□□ -2.01
UFD4YKL010C FLO11P08640 1367 aa2.47□□□□□ -2.01
UFD4YKL010C GPA1P08539 472 aa2.47□□□□□ -2.01
UFD4YKL010C LCB1P25045 558 aaKnown RBP2.47□□□□□ -2.01
UFD4YKL010C YHL050CP38721 697 aa2.47□□□□□ -2.01
UFD4YKL010C TCD1P38756 429 aa2.47□□□□□ -2.01
UFD4YKL010C YKE2P52553 114 aa2.47□□□□□ -2.01
UFD4YKL010C ALD3P54114 506 aa2.47□□□□□ -2.01
UFD4YKL010C CTI6Q08923 506 aa2.47□□□□□ -2.01
UFD4YKL010C YDL176WQ12027 708 aa2.47□□□□□ -2.01
UFD4YKL010C PTC5Q12511 572 aa2.47□□□□□ -2.01
UFD4YKL010C FOB1O13329 566 aa2.46□□□□□ -2.01
UFD4YKL010C SCJ1P25303 377 aa2.46□□□□□ -2.01
UFD4YKL010C URA1P28272 314 aaPredicted RBP2.46□□□□□ -2.01
UFD4YKL010C YEL043WP32618 956 aa2.46□□□□□ -2.01
UFD4YKL010C TDA3P38758 523 aa2.46□□□□□ -2.01
UFD4YKL010C ICP55P40051 511 aa2.46□□□□□ -2.01
UFD4YKL010C TFG2P41896 400 aaPredicted RBP2.46□□□□□ -2.01
UFD4YKL010C SKG3Q06315 1026 aa2.46□□□□□ -2.01
UFD4YKL010C MCM4P30665 933 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C MRT4P33201 236 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C MNN4P36044 1178 aa2.46□□□□□ -2.02
UFD4YKL010C SPL2P38839 148 aa2.46□□□□□ -2.02
UFD4YKL010C PEX14P53112 341 aa2.46□□□□□ -2.02
UFD4YKL010C APC11Q12157 165 aa2.46□□□□□ -2.02
UFD4YKL010C CEX1Q12453 761 aa2.46□□□□□ -2.02
UFD4YKL010C RNR3P21672 869 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C YBR287WP38355 427 aa2.46□□□□□ -2.02
UFD4YKL010C YNL193WP53870 558 aa2.46□□□□□ -2.02
UFD4YKL010C NAF1P53919 492 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C HOS3Q02959 697 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C YDR444WQ04093 687 aa2.46□□□□□ -2.02
UFD4YKL010C TOS4Q06266 489 aa2.46□□□□□ -2.02
UFD4YKL010C NOP58Q12499 511 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C RMP1Q12530 201 aa2.46□□□□□ -2.02
UFD4YKL010C YOL087CQ99247 1116 aa2.46□□□□□ -2.02
UFD4YKL010C COQ1P18900 473 aa2.46□□□□□ -2.02
UFD4YKL010C SRP54P20424 541 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C EFM2P38347 419 aa2.46□□□□□ -2.02
UFD4YKL010C MMS21P38632 267 aa2.46□□□□□ -2.02
UFD4YKL010C ROG3P43602 733 aa2.46□□□□□ -2.02
UFD4YKL010C AIP1P46680 615 aaKnown RBP2.46□□□□□ -2.02
UFD4YKL010C PUS6P53294 404 aa2.46□□□□□ -2.02
UFD4YKL010C SSL2Q00578 843 aa2.46□□□□□ -2.02
UFD4YKL010C FCP1Q03254 732 aa2.46□□□□□ -2.02
UFD4YKL010C FUS2Q05670 677 aa2.46□□□□□ -2.02
UFD4YKL010C PUS5Q06244 254 aa2.46□□□□□ -2.02
UFD4YKL010C CYC8P14922 966 aa2.45□□□□□ -2.02
UFD4YKL010C RER2P35196 286 aa2.45□□□□□ -2.02
UFD4YKL010C CTH1P47976 325 aa2.45□□□□□ -2.02
UFD4YKL010C YGR153WP48238 217 aa2.45□□□□□ -2.02
UFD4YKL010C HST3P53687 447 aa2.45□□□□□ -2.02
UFD4YKL010C YNR021WP53723 404 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C BOP3P53958 396 aa2.45□□□□□ -2.02
UFD4YKL010C RPS15Q01855 142 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C SYH1Q02875 849 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C SPB4P25808 606 aaPredicted RBP2.45□□□□□ -2.02
UFD4YKL010C DPB3P27344 201 aa2.45□□□□□ -2.02
UFD4YKL010C RRP1P35178 278 aaPredicted RBP2.45□□□□□ -2.02
UFD4YKL010C RET3P53600 189 aa2.45□□□□□ -2.02
UFD4YKL010C CLF1Q12309 687 aaPredicted RBP2.45□□□□□ -2.02
UFD4YKL010C SWI4P25302 1093 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C MUD2P36084 527 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C SDS3P40505 327 aa2.45□□□□□ -2.02
UFD4YKL010C YJR115WP47152 169 aa2.45□□□□□ -2.02
UFD4YKL010C WAR1Q03631 944 aa2.45□□□□□ -2.02
UFD4YKL010C POB3Q04636 552 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C YMR074CQ04773 145 aa2.45□□□□□ -2.02
UFD4YKL010C ALR1Q08269 859 aa2.45□□□□□ -2.02
UFD4YKL010C TCO89Q08921 799 aa2.45□□□□□ -2.02
UFD4YKL010C GET3Q12154 354 aaKnown RBP2.45□□□□□ -2.02
UFD4YKL010C ECM29P38737 1868 aa2.45□□□□□ -2.02
UFD4YKL010C CKA2P19454 339 aa2.44□□□□□ -2.02
UFD4YKL010C MRC1P25588 1096 aa2.44□□□□□ -2.02
UFD4YKL010C GCG1P32656 232 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C RXT2P38255 430 aa2.44□□□□□ -2.02
UFD4YKL010C RTS1P38903 757 aa2.44□□□□□ -2.02
UFD4YKL010C STM1P39015 273 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C YER130CP39959 443 aa2.44□□□□□ -2.02
UFD4YKL010C FIG4P42837 879 aa2.44□□□□□ -2.02
UFD4YKL010C VPS75P53853 264 aa2.44□□□□□ -2.02
UFD4YKL010C NOP6Q07623 225 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C HMI1Q12039 706 aa2.44□□□□□ -2.02
UFD4YKL010C SLY41P22215 453 aa2.44□□□□□ -2.02
UFD4YKL010C GAR1P28007 205 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C PFF1P38244 976 aa2.44□□□□□ -2.02
UFD4YKL010C LEO1P38439 464 aa2.44□□□□□ -2.02
UFD4YKL010C CCT3P39077 534 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C HFM1P51979 1187 aa2.44□□□□□ -2.02
UFD4YKL010C ERO1Q03103 563 aa2.44□□□□□ -2.02
UFD4YKL010C EST2Q06163 884 aa2.44□□□□□ -2.02
UFD4YKL010C RPS9BP05755 195 aaKnown RBP2.44□□□□□ -2.02
UFD4YKL010C CDC6P09119 513 aa2.44□□□□□ -2.02
UFD4YKL010C GRX7P38068 203 aa2.44□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms