RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	RIM11	P38615	370 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	PEX28	P38848	579 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	PPT1	P53043	513 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	POB3	Q04636	552 aa	Known RBP	5.05	□□□□□ -1.6
UBX5	YDR330W	CMR1	Q12510	522 aa	Known RBP	5.05	□□□□□ -1.6
UBX5	YDR330W	GCN2	P15442	1659 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	MET6	P05694	767 aa	Known RBP	5.04	□□□□□ -1.6
UBX5	YDR330W	YNR040W	P53736	256 aa		5.04	□□□□□ -1.6
UBX5	YDR330W	PEX13	P80667	386 aa		5.04	□□□□□ -1.6
UBX5	YDR330W	NOG1	Q02892	647 aa	Known RBP	5.04	□□□□□ -1.6
UBX5	YDR330W	CCP1	P00431	361 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	SEC23	P15303	768 aa	Known RBP	5.03	□□□□□ -1.6
UBX5	YDR330W	BAS1	P22035	811 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	NPR1	P22211	790 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	YKL069W	P36088	180 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	CHZ1	P40019	153 aa	Predicted RBP	5.03	□□□□□ -1.6
UBX5	YDR330W	TYW3	P53177	273 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	SPO20	Q04359	397 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	YLR346C	Q06139	101 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	SPO75	Q07798	868 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	YSP2	Q06681	1438 aa		5.03	□□□□□ -1.6
UBX5	YDR330W	PRP5	P21372	849 aa	Predicted RBP	5.02	□□□□□ -1.61
UBX5	YDR330W	NUP82	P40368	713 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	ENT3	P47160	408 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	YGL140C	P53120	1219 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	EEB1	Q02891	456 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	HEH2	Q03281	663 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	OSH2	Q12451	1283 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	MMS1	Q06211	1407 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	CDC19	P00549	500 aa	Known RBP	5.02	□□□□□ -1.61
UBX5	YDR330W	IDI1	P15496	288 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	MSH3	P25336	1018 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	UTP14	Q04500	899 aa	Known RBP	5.02	□□□□□ -1.61
UBX5	YDR330W	HDA2	Q06629	674 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	YLR125W	Q12138	136 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	GLO4	Q12320	285 aa		5.02	□□□□□ -1.61
UBX5	YDR330W	IQG1	Q12280	1495 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	AGP1	P25376	633 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	YKL077W	P36081	392 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	GNP1	P48813	663 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	SIW14	P53965	281 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.01	□□□□□ -1.61	not detected
UBX5	YDR330W	BUD21	Q08492	214 aa	Predicted RBP	5.01	□□□□□ -1.61
UBX5	YDR330W	FLC1	Q08967	793 aa		5.01	□□□□□ -1.61
UBX5	YDR330W	TRP2	P00899	507 aa	Known RBP	5	□□□□□ -1.61
UBX5	YDR330W	PHO8	P11491	566 aa		5	□□□□□ -1.61
UBX5	YDR330W	VMA4	P22203	233 aa	Known RBP	5	□□□□□ -1.61
UBX5	YDR330W	LYP1	P32487	611 aa		5	□□□□□ -1.61
UBX5	YDR330W	MRP8	P35719	219 aa		5	□□□□□ -1.61
UBX5	YDR330W	MNN1	P39106	762 aa		5	□□□□□ -1.61
UBX5	YDR330W	INP51	P40559	946 aa	Known RBP	5	□□□□□ -1.61
UBX5	YDR330W	YJL181W	P46987	611 aa		5	□□□□□ -1.61
UBX5	YDR330W	YGR125W	P53273	1036 aa		5	□□□□□ -1.61
UBX5	YDR330W	PPM2	Q08282	695 aa		5	□□□□□ -1.61
UBX5	YDR330W	YGR161W-C	Q3E744	92 aa		5	□□□□□ -1.61
UBX5	YDR330W	GAL11	P19659	1081 aa		4.99	□□□□□ -1.61
UBX5	YDR330W	SBA1	P28707	216 aa	Known RBP	4.99	□□□□□ -1.61
UBX5	YDR330W	TIM23	P32897	222 aa		4.99	□□□□□ -1.61
UBX5	YDR330W	YHR020W	P38708	688 aa	Known RBP	4.99	□□□□□ -1.61
UBX5	YDR330W	GGA2	P38817	585 aa	Known RBP	4.99	□□□□□ -1.61
UBX5	YDR330W	SNF7	P39929	240 aa	Known RBP	4.99	□□□□□ -1.61
UBX5	YDR330W	IRR1	P40541	1150 aa		4.99	□□□□□ -1.61
UBX5	YDR330W	SHE9	Q04172	456 aa		4.99	□□□□□ -1.61
UBX5	YDR330W	SEC7	P11075	2009 aa	Known RBP	4.99	□□□□□ -1.61
UBX5	YDR330W	HSP60	P19882	572 aa	Known RBP	4.98	□□□□□ -1.61
UBX5	YDR330W	RER2	P35196	286 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	YBR184W	P38299	523 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	OSH7	P38755	437 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	FET4	P40988	552 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	YJR124C	P47159	448 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	YGL081W	P53156	320 aa		4.98	□□□□□ -1.61
UBX5	YDR330W	BIO5	P53744	561 aa	Known RBP	4.98	□□□□□ -1.61
UBX5	YDR330W	TSR4	P25040	408 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	RDH54	P38086	958 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	EXO5	P38289	585 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	HXT13	P39924	564 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	RSP5	P39940	809 aa	Known RBP	4.97	□□□□□ -1.61
UBX5	YDR330W	ERP6	P53198	216 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	HXT17	P53631	564 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	HXT15	P54854	567 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	OPT2	Q06593	877 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	BNR1	P40450	1375 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
UBX5	YDR330W	HVG1	P0CE11	249 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	FPS1	P23900	669 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	RPL8B	P29453	256 aa	Known RBP	4.97	□□□□□ -1.61
UBX5	YDR330W	THI4	P32318	326 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	ABD1	P32783	436 aa	Predicted RBP	4.97	□□□□□ -1.61
UBX5	YDR330W	STE5	P32917	917 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	GLY1	P37303	387 aa	Known RBP	4.97	□□□□□ -1.61
UBX5	YDR330W	SEA4	P38164	1038 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	PBY1	P38254	753 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	ATG14	P38270	344 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	SCW11	P53189	542 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	GCR2	Q01722	534 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	EST2	Q06163	884 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	SOG2	Q08817	791 aa		4.97	□□□□□ -1.61
UBX5	YDR330W	LTE1	P07866	1435 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	HTS1	P07263	546 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	SBP1	P10080	294 aa	Known RBP	4.96	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms