RNA–Protein interactions for RNA: ENST00000578600.1

PTPRM-208, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-208ENST00000578600 USP17L10C9JJH3 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L13C9JLJ4 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L12C9JPN9 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L11C9JVI0 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L21D6R901 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L18D6R9N7 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L22D6RA61 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L17D6RBQ6 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L19D6RCP7 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L20D6RJB6 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 CD2BP2O95400 341 aaKnown RBP9.17□□□□□ -0.94
PTPRM-208ENST00000578600 USP17L24Q0WX57 530 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 CCDC125Q86Z20 511 aa9.17□□□□□ -0.94
PTPRM-208ENST00000578600 KCTD15Q96SI1 283 aaPredicted RBP9.17□□□□□ -0.94
PTPRM-208ENST00000578600 CDCA7Q9BWT1 371 aaPredicted RBP9.17□□□□□ -0.94
PTPRM-208ENST00000578600 NOVA2Q9UNW9 492 aaKnown RBP9.17□□□□□ -0.94
PTPRM-208ENST00000578600 CLDN10P78369 228 aa9.16□□□□□ -0.94
PTPRM-208ENST00000578600 RC3H1Q5TC82 1133 aaKnown RBP9.16□□□□□ -0.94
PTPRM-208ENST00000578600 CDK15Q96Q40 435 aa9.16□□□□□ -0.94
PTPRM-208ENST00000578600 ZBTB7BO15156 539 aaPredicted RBP9.15□□□□□ -0.94
PTPRM-208ENST00000578600 DKK1O94907 266 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 RASA1P20936 1047 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 TMEM164Q5U3C3 297 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 LARP1Q6PKG0 1096 aaKnown RBP9.15□□□□□ -0.94
PTPRM-208ENST00000578600 NPM2Q86SE8 214 aaKnown RBP9.15□□□□□ -0.94
PTPRM-208ENST00000578600 MPNDQ8N594 471 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 STK32AQ8WU08 396 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 NOD1Q9Y239 953 aa9.15□□□□□ -0.94
PTPRM-208ENST00000578600 WDR97A6NE52 1622 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 SIAH2O43255 324 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 BRD1O95696 1058 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 TRIM50Q86XT4 487 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 OGFOD1Q8N543 542 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 EHBP1Q8NDI1 1231 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 GZF1Q9H116 711 aaPredicted RBP9.14□□□□□ -0.95
PTPRM-208ENST00000578600 EIF4G3O43432 1585 aaKnown RBP9.14□□□□□ -0.95
PTPRM-208ENST00000578600 DNMBPQ6XZF7 1577 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 MAGI1Q96QZ7 1491 aaPredicted RBP9.14□□□□□ -0.95
PTPRM-208ENST00000578600 SOGA1O94964 1423 aa9.14□□□□□ -0.95
PTPRM-208ENST00000578600 SYNJ1O43426 1573 aa9.13□□□□□ -0.95
PTPRM-208ENST00000578600 OXLD1Q5BKU9 147 aa9.13□□□□□ -0.95
PTPRM-208ENST00000578600 INTS6LQ5JSJ4 861 aaKnown RBP9.13□□□□□ -0.95
PTPRM-208ENST00000578600 PCDHB11Q9Y5F2 797 aa9.13□□□□□ -0.95
PTPRM-208ENST00000578600 SLC19A1P41440 591 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 GRM5P41594 1212 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 ATP1A2P50993 1020 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 KCNA1Q09470 495 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 FAM69CQ0P6D2 419 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 TMCO4Q5TGY1 634 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 VASH1Q7L8A9 365 aaPredicted RBP9.12□□□□□ -0.95
PTPRM-208ENST00000578600 ANKMY2Q8IV38 441 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 LARGE2Q8N3Y3 721 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 DNAAF2Q9NVR5 837 aaKnown RBP9.12□□□□□ -0.95
PTPRM-208ENST00000578600 PCDHGA11Q9Y5H2 935 aa9.12□□□□□ -0.95
PTPRM-208ENST00000578600 ERVH48-1M5A8F1 160 aa9.11□□□□□ -0.95
PTPRM-208ENST00000578600 WNT7AO00755 349 aa9.11□□□□□ -0.95
PTPRM-208ENST00000578600 USP4Q13107 963 aa9.11□□□□□ -0.95
PTPRM-208ENST00000578600 SIX5Q8N196 739 aa9.11□□□□□ -0.95
PTPRM-208ENST00000578600 KIAA1024Q9UPX6 916 aa9.11□□□□□ -0.95
PTPRM-208ENST00000578600 CCDC88BA6NC98 1476 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 GTF2IP78347 998 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 DPYDQ12882 1025 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 FAM200AQ8TCP9 573 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 SIRT1Q96EB6 747 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 SLAIN2Q9P270 581 aa9.1□□□□□ -0.95
PTPRM-208ENST00000578600 TDRD9Q8NDG6 1382 aaKnown RBP9.1□□□□□ -0.95
PTPRM-208ENST00000578600 GRIN2BQ13224 1484 aa9.09□□□□□ -0.95
PTPRM-208ENST00000578600 GAPVD1Q14C86 1478 aa9.09□□□□□ -0.95
PTPRM-208ENST00000578600 RAB15P59190 212 aa9.09□□□□□ -0.95
PTPRM-208ENST00000578600 SPRYD7Q5W111 196 aa9.09□□□□□ -0.95
PTPRM-208ENST00000578600 ZNF594Q96JF6 807 aaPredicted RBP9.09□□□□□ -0.95
PTPRM-208ENST00000578600 TLL2Q9Y6L7 1015 aa9.09□□□□□ -0.95
PTPRM-208ENST00000578600 SYNJ2O15056 1496 aa9.08□□□□□ -0.96
PTPRM-208ENST00000578600 SCTRP47872 440 aa9.08□□□□□ -0.96
PTPRM-208ENST00000578600 ARID5BQ14865 1188 aa9.08□□□□□ -0.96
PTPRM-208ENST00000578600 MRGPRX2Q96LB1 330 aa9.08□□□□□ -0.96
PTPRM-208ENST00000578600 POLA1P09884 1462 aaPredicted RBP9.08□□□□□ -0.96
PTPRM-208ENST00000578600 A0A0G2JS52 829 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 ADH1CP00326 375 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 FSHRP23945 695 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 ERVK-9P63128 1117 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 PHLDB3Q6NSJ2 640 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 CLP1Q92989 425 aaKnown RBP9.07□□□□□ -0.96
PTPRM-208ENST00000578600 PRDM2Q13029 1718 aa9.07□□□□□ -0.96
PTPRM-208ENST00000578600 CLASP1Q7Z460 1538 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 TARBP1Q13395 1621 aaKnown RBP9.06□□□□□ -0.96
PTPRM-208ENST00000578600 CCDC102BQ68D86 513 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 B4GALNT3Q6L9W6 998 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 TMPRSS4Q9NRS4 437 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 PLA2G2EQ9NZK7 142 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 SNAPC4Q5SXM2 1469 aa9.06□□□□□ -0.96
PTPRM-208ENST00000578600 NR5A1Q13285 461 aa9.05□□□□□ -0.96
PTPRM-208ENST00000578600 SWI5Q1ZZU3 235 aa9.05□□□□□ -0.96
PTPRM-208ENST00000578600 ZNF598Q86UK7 904 aaKnown RBP9.05□□□□□ -0.96
PTPRM-208ENST00000578600 CHD1O14646 1710 aa9.05□□□□□ -0.96
PTPRM-208ENST00000578600 MYCP01106 439 aaPredicted RBP9.04□□□□□ -0.96
PTPRM-208ENST00000578600 NR3C2P08235 984 aa9.04□□□□□ -0.96
PTPRM-208ENST00000578600 SEC13P55735 322 aa9.04□□□□□ -0.96
PTPRM-208ENST00000578600 DHX9Q08211 1270 aaKnown RBP9.04□□□□□ -0.96
PTPRM-208ENST00000578600 CC2D2BQ6DHV5 1058 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms