RNA–Protein interactions for RNA: ENST00000578600.1

PTPRM-208, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-208ENST00000578600 AEBP2Q6ZN18 517 aaPredicted RBP22.72■■□□□ 1.23
PTPRM-208ENST00000578600 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
PTPRM-208ENST00000578600 PHF23Q9BUL5 403 aaPredicted RBP19.95■□□□□ 0.78
PTPRM-208ENST00000578600 SENP3Q9H4L4 574 aaPredicted RBP19.14■□□□□ 0.65
PTPRM-208ENST00000578600 PLPPR3Q6T4P5 718 aa18.5■□□□□ 0.55
PTPRM-208ENST00000578600 FOXD1Q16676 465 aa17.75■□□□□ 0.43
PTPRM-208ENST00000578600 PPP6R1Q9UPN7 881 aa17.45■□□□□ 0.38
PTPRM-208ENST00000578600 ADRA2BP18089 450 aa17.42■□□□□ 0.38
PTPRM-208ENST00000578600 PIAS4Q8N2W9 510 aaPredicted RBP16.79■□□□□ 0.28
PTPRM-208ENST00000578600 KCNA4P22459 653 aa16.5■□□□□ 0.23
PTPRM-208ENST00000578600 PPP4R3CPQ6ZMV5 832 aa16.38■□□□□ 0.21
PTPRM-208ENST00000578600 MSH5O43196 834 aa16.15■□□□□ 0.18
PTPRM-208ENST00000578600 NCBP3Q53F19 620 aaKnown RBP16.03■□□□□ 0.16
PTPRM-208ENST00000578600 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
PTPRM-208ENST00000578600 NPM3O75607 178 aaKnown RBP15.85■□□□□ 0.13
PTPRM-208ENST00000578600 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
PTPRM-208ENST00000578600 EHMT2Q96KQ7 1210 aa15.78■□□□□ 0.12
PTPRM-208ENST00000578600 SLC4A1APQ9BWU0 796 aaKnown RBP15.76■□□□□ 0.11
PTPRM-208ENST00000578600 MAPK8IP2Q13387 824 aaPredicted RBP15.69■□□□□ 0.1
PTPRM-208ENST00000578600 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
PTPRM-208ENST00000578600 RNF216Q9NWF9 866 aaPredicted RBP15.41■□□□□ 0.06
PTPRM-208ENST00000578600 DNAJC5BQ9UF47 199 aa15.4■□□□□ 0.06
PTPRM-208ENST00000578600 DMRT2Q9Y5R5 561 aa15.38■□□□□ 0.05
PTPRM-208ENST00000578600 HOXD11P31277 338 aaPredicted RBP15.26■□□□□ 0.03
PTPRM-208ENST00000578600 ZBTB22O15209 634 aa15.23■□□□□ 0.03
PTPRM-208ENST00000578600 FOXD4L1Q9NU39 408 aa15.04■□□□□ -0
PTPRM-208ENST00000578600 SLC4A2P04920 1241 aa14.89□□□□□ -0.03
PTPRM-208ENST00000578600 MYCNP04198 464 aaPredicted RBP14.6□□□□□ -0.07
PTPRM-208ENST00000578600 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
PTPRM-208ENST00000578600 ATXN8OSP0DMR3 200 aa14.5□□□□□ -0.09
PTPRM-208ENST00000578600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.46□□□□□ -0.09
PTPRM-208ENST00000578600 U3KPZ7 1027 aaPredicted RBP14.33□□□□□ -0.12
PTPRM-208ENST00000578600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
PTPRM-208ENST00000578600 HNRNPUL2Q1KMD3 747 aaKnown RBP14.24□□□□□ -0.13
PTPRM-208ENST00000578600 ATF5Q9Y2D1 282 aaPredicted RBP14.24□□□□□ -0.13
PTPRM-208ENST00000578600 SAMD1Q6SPF0 538 aaPredicted RBP14.23□□□□□ -0.13
PTPRM-208ENST00000578600 APLP2Q06481 763 aa13.97□□□□□ -0.17
PTPRM-208ENST00000578600 POTEDQ86YR6 584 aa13.97□□□□□ -0.17
PTPRM-208ENST00000578600 RNF39Q9H2S5 420 aa13.93□□□□□ -0.18
PTPRM-208ENST00000578600 ZNF219Q9P2Y4 722 aaPredicted RBP13.93□□□□□ -0.18
PTPRM-208ENST00000578600 FKBP8Q14318 412 aa13.91□□□□□ -0.18
PTPRM-208ENST00000578600 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
PTPRM-208ENST00000578600 C1QBPQ07021 282 aaKnown RBP13.75□□□□□ -0.21
PTPRM-208ENST00000578600 TRHP20396 242 aaPredicted RBP13.7□□□□□ -0.22
PTPRM-208ENST00000578600 CAPN15O75808 1086 aa13.66□□□□□ -0.22
PTPRM-208ENST00000578600 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
PTPRM-208ENST00000578600 POLA2Q14181 598 aa13.62□□□□□ -0.23
PTPRM-208ENST00000578600 FBLN2P98095 1184 aa13.52□□□□□ -0.25
PTPRM-208ENST00000578600 SPDYE4A6NLX3 237 aa13.49□□□□□ -0.25
PTPRM-208ENST00000578600 ABCB7O75027 752 aa13.45□□□□□ -0.26
PTPRM-208ENST00000578600 AMER1Q5JTC6 1135 aaPredicted RBP13.45□□□□□ -0.26
PTPRM-208ENST00000578600 RTN4Q9NQC3 1192 aaKnown RBP13.45□□□□□ -0.26
PTPRM-208ENST00000578600 PROM2Q8N271 834 aa13.41□□□□□ -0.26
PTPRM-208ENST00000578600 DSG3P32926 999 aa13.4□□□□□ -0.26
PTPRM-208ENST00000578600 ZBTB12Q9Y330 459 aaPredicted RBP13.4□□□□□ -0.26
PTPRM-208ENST00000578600 FBXO3Q9UK99 471 aa13.28□□□□□ -0.28
PTPRM-208ENST00000578600 CACNB1Q02641 598 aaPredicted RBP13.18□□□□□ -0.3
PTPRM-208ENST00000578600 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
PTPRM-208ENST00000578600 VASPP50552 380 aaPredicted RBP13.11□□□□□ -0.31
PTPRM-208ENST00000578600 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
PTPRM-208ENST00000578600 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
PTPRM-208ENST00000578600 SPDYE2Q495Y8 402 aa13.1□□□□□ -0.31
PTPRM-208ENST00000578600 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
PTPRM-208ENST00000578600 SSUH2Q9Y2M2 353 aa13.08□□□□□ -0.32
PTPRM-208ENST00000578600 IFNLR1Q8IU57 520 aaPredicted RBP13.01□□□□□ -0.33
PTPRM-208ENST00000578600 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
PTPRM-208ENST00000578600 PABPN1Q86U42 306 aaKnown RBP eCLIP12.95□□□□□ -0.34
PTPRM-208ENST00000578600 STAG3Q9UJ98 1225 aa12.9□□□□□ -0.34
PTPRM-208ENST00000578600 PKD2Q13563 968 aa12.75□□□□□ -0.37
PTPRM-208ENST00000578600 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
PTPRM-208ENST00000578600 KLHL34Q8N239 644 aa12.73□□□□□ -0.37
PTPRM-208ENST00000578600 PLCD3Q8N3E9 789 aa12.73□□□□□ -0.37
PTPRM-208ENST00000578600 MIER1Q8N108 512 aa12.71□□□□□ -0.37
PTPRM-208ENST00000578600 RBM42Q9BTD8 480 aaKnown RBP12.69□□□□□ -0.38
PTPRM-208ENST00000578600 AKT1S1Q96B36 256 aa12.67□□□□□ -0.38
PTPRM-208ENST00000578600 SPDYE1Q8NFV5 336 aaPredicted RBP12.58□□□□□ -0.4
PTPRM-208ENST00000578600 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
PTPRM-208ENST00000578600 ZBTB47Q9UFB7 747 aaPredicted RBP12.57□□□□□ -0.4
PTPRM-208ENST00000578600 REM2Q8IYK8 340 aaPredicted RBP12.55□□□□□ -0.4
PTPRM-208ENST00000578600 ECM2O94769 699 aaPredicted RBP12.52□□□□□ -0.41
PTPRM-208ENST00000578600 DCAF8L2P0C7V8 631 aa12.49□□□□□ -0.41
PTPRM-208ENST00000578600 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
PTPRM-208ENST00000578600 CREBZFQ9NS37 354 aa12.46□□□□□ -0.41
PTPRM-208ENST00000578600 PRR29P0C7W0 189 aa12.45□□□□□ -0.42
PTPRM-208ENST00000578600 PLCB2Q00722 1185 aa12.44□□□□□ -0.42
PTPRM-208ENST00000578600 RGL2O15211 777 aa12.43□□□□□ -0.42
PTPRM-208ENST00000578600 CIZ1Q9ULV3 898 aaPredicted RBP12.43□□□□□ -0.42
PTPRM-208ENST00000578600 NUBP1P53384 320 aa12.42□□□□□ -0.42
PTPRM-208ENST00000578600 MNX1P50219 401 aaPredicted RBP12.41□□□□□ -0.42
PTPRM-208ENST00000578600 PITPNM1O00562 1244 aa12.4□□□□□ -0.42
PTPRM-208ENST00000578600 NPM1P06748 294 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTPRM-208ENST00000578600 TRIM41Q8WV44 630 aa12.36□□□□□ -0.43
PTPRM-208ENST00000578600 GSE1Q14687 1217 aa12.34□□□□□ -0.43
PTPRM-208ENST00000578600 NISCHQ9Y2I1 1504 aa12.32□□□□□ -0.44
PTPRM-208ENST00000578600 BBXQ8WY36 941 aaPredicted RBP12.32□□□□□ -0.44
PTPRM-208ENST00000578600 DCAF8Q5TAQ9 597 aa12.27□□□□□ -0.45
PTPRM-208ENST00000578600 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
PTPRM-208ENST00000578600 RASEFQ8IZ41 740 aa12.24□□□□□ -0.45
PTPRM-208ENST00000578600 FAM212AQ96EL1 285 aa12.23□□□□□ -0.45
PTPRM-208ENST00000578600 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms