RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 ACIN1Q9UKV3 1341 aaKnown RBP9.71□□□□□ -0.86
LRRC28-220ENST00000561253 PRG4Q92954 1404 aaPredicted RBP9.71□□□□□ -0.86
LRRC28-220ENST00000561253 DISP1Q96F81 1524 aa9.71□□□□□ -0.86
LRRC28-220ENST00000561253 GIGYF1O75420 1035 aaPredicted RBP9.7□□□□□ -0.86
LRRC28-220ENST00000561253 ARID5BQ14865 1188 aa9.7□□□□□ -0.86
LRRC28-220ENST00000561253 SPRYD7Q5W111 196 aa9.7□□□□□ -0.86
LRRC28-220ENST00000561253 VASH1Q7L8A9 365 aaPredicted RBP9.7□□□□□ -0.86
LRRC28-220ENST00000561253 PHTF2Q8N3S3 785 aa9.7□□□□□ -0.86
LRRC28-220ENST00000561253 PLPP7Q8NBV4 271 aa9.7□□□□□ -0.86
LRRC28-220ENST00000561253 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.69□□□□□ -0.86
LRRC28-220ENST00000561253 USP17L5A8MUK1 530 aa9.69□□□□□ -0.86
LRRC28-220ENST00000561253 KCTD15Q96SI1 283 aaPredicted RBP9.69□□□□□ -0.86
LRRC28-220ENST00000561253 USP17L3A6NCW0 530 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 USP17L4A6NCW7 530 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 MAP7D1Q3KQU3 841 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 USP17L2Q6R6M4 530 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 USP17L1Q7RTZ2 530 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 PRKD2Q9BZL6 878 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 MAP4K5Q9Y4K4 846 aa9.68□□□□□ -0.86
LRRC28-220ENST00000561253 WNT7AO00755 349 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 RAB15P59190 212 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 ZNF697Q5TEC3 545 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 PLEKHM2Q8IWE5 1019 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 SEPT12Q8IYM1 358 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 DEPDC4Q8N2C3 294 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 DOLKQ9UPQ8 538 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 CTTNBP2Q8WZ74 1663 aa9.67□□□□□ -0.86
LRRC28-220ENST00000561253 ESPNB1AK53 854 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 LZTS3O60299 673 aaPredicted RBP9.66□□□□□ -0.86
LRRC28-220ENST00000561253 ZNF598Q86UK7 904 aaKnown RBP9.66□□□□□ -0.86
LRRC28-220ENST00000561253 CCDC125Q86Z20 511 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 MRGPRX2Q96LB1 330 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 CDK15Q96Q40 435 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 VRTNQ9H8Y1 702 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 TLL2Q9Y6L7 1015 aa9.66□□□□□ -0.86
LRRC28-220ENST00000561253 V9GY48 417 aaPredicted RBP9.66□□□□□ -0.86
LRRC28-220ENST00000561253 TNIKQ9UKE5 1360 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 NCOA4Q13772 614 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 EML3Q32P44 896 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 CDCA8Q53HL2 280 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 CCDC85AQ96PX6 553 aaPredicted RBP9.65□□□□□ -0.86
LRRC28-220ENST00000561253 CHIC2Q9UKJ5 165 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 SAMD9Q5K651 1589 aa9.65□□□□□ -0.86
LRRC28-220ENST00000561253 KIAA0556O60303 1618 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 SIAH2O43255 324 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 FSHRP23945 695 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 SRPK2P78362 688 aaKnown RBP9.64□□□□□ -0.87
LRRC28-220ENST00000561253 FOXC1Q12948 553 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 TSGA10IPQ3SY00 556 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 MPNDQ8N594 471 aa9.64□□□□□ -0.87
LRRC28-220ENST00000561253 OXLD1Q5BKU9 147 aa9.63□□□□□ -0.87
LRRC28-220ENST00000561253 INTS6LQ5JSJ4 861 aaKnown RBP9.63□□□□□ -0.87
LRRC28-220ENST00000561253 TRAF7Q6Q0C0 670 aa9.63□□□□□ -0.87
LRRC28-220ENST00000561253 MKRN1Q9UHC7 482 aaKnown RBP9.63□□□□□ -0.87
LRRC28-220ENST00000561253 PCDHB11Q9Y5F2 797 aa9.63□□□□□ -0.87
LRRC28-220ENST00000561253 ATP5J2-PTCD1G3V325 749 aa9.62□□□□□ -0.87
LRRC28-220ENST00000561253 KANK4Q5T7N3 995 aaPredicted RBP9.62□□□□□ -0.87
LRRC28-220ENST00000561253 CARMIL2Q6F5E8 1435 aa9.62□□□□□ -0.87
LRRC28-220ENST00000561253 ARHGAP35Q9NRY4 1499 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 LOC105371045A0A1W2PR82 267 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 ADH1CP00326 375 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 CYB5RLQ6IPT4 315 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 RETREG2Q8NC44 543 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 SIRT1Q96EB6 747 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 NOD1Q9Y239 953 aa9.61□□□□□ -0.87
LRRC28-220ENST00000561253 PTPRGP23470 1445 aa9.6□□□□□ -0.87
LRRC28-220ENST00000561253 GRM5P41594 1212 aa9.6□□□□□ -0.87
LRRC28-220ENST00000561253 DHX9Q08211 1270 aaKnown RBP9.6□□□□□ -0.87
LRRC28-220ENST00000561253 NR5A1Q13285 461 aa9.6□□□□□ -0.87
LRRC28-220ENST00000561253 TRIM50Q86XT4 487 aa9.6□□□□□ -0.87
LRRC28-220ENST00000561253 TRIM52Q96A61 297 aa9.6□□□□□ -0.87
LRRC28-220ENST00000561253 CDCA7Q9BWT1 371 aaPredicted RBP9.6□□□□□ -0.87
LRRC28-220ENST00000561253 ERVH48-1M5A8F1 160 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 ATG7O95352 703 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 ALDH1A1P00352 501 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 CSB-PGBD3P0DP91 1061 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 PDIA4P13667 645 aaKnown RBP9.59□□□□□ -0.87
LRRC28-220ENST00000561253 USP4Q13107 963 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 LARP1Q6PKG0 1096 aaKnown RBP9.59□□□□□ -0.87
LRRC28-220ENST00000561253 ESF1Q9H501 851 aaKnown RBP9.59□□□□□ -0.87
LRRC28-220ENST00000561253 PKD2L1Q9P0L9 805 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 EFCAB5A4FU69 1503 aa9.59□□□□□ -0.87
LRRC28-220ENST00000561253 MYCP01106 439 aaPredicted RBP9.58□□□□□ -0.88
LRRC28-220ENST00000561253 RASA1P20936 1047 aa9.58□□□□□ -0.88
LRRC28-220ENST00000561253 ATP1A2P50993 1020 aa9.58□□□□□ -0.88
LRRC28-220ENST00000561253 PDE4CQ08493 712 aa9.58□□□□□ -0.88
LRRC28-220ENST00000561253 CCDC116Q8IYX3 515 aa9.58□□□□□ -0.88
LRRC28-220ENST00000561253 WASF2Q9Y6W5 498 aa9.58□□□□□ -0.88
LRRC28-220ENST00000561253 FHOD3Q2V2M9 1422 aa9.57□□□□□ -0.88
LRRC28-220ENST00000561253 SNIP1Q8TAD8 396 aaKnown RBP9.57□□□□□ -0.88
LRRC28-220ENST00000561253 UHRF1BP1LA0JNW5 1464 aa9.57□□□□□ -0.88
LRRC28-220ENST00000561253 ABCA8O94911 1581 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 PLB1Q6P1J6 1458 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 TTC24A2A3L6 582 aaPredicted RBP9.56□□□□□ -0.88
LRRC28-220ENST00000561253 FAM196BA6NMK8 535 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L15C9J2P7 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L10C9JJH3 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L13C9JLJ4 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L12C9JPN9 530 aa9.56□□□□□ -0.88
LRRC28-220ENST00000561253 USP17L11C9JVI0 530 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms