RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 AEBP2Q6ZN18 517 aaPredicted RBP24.19■■□□□ 1.46
LRRC28-220ENST00000561253 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
LRRC28-220ENST00000561253 PHF23Q9BUL5 403 aaPredicted RBP21.1■□□□□ 0.97
LRRC28-220ENST00000561253 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
LRRC28-220ENST00000561253 PLPPR3Q6T4P5 718 aa19.66■□□□□ 0.74
LRRC28-220ENST00000561253 FOXD1Q16676 465 aa18.98■□□□□ 0.63
LRRC28-220ENST00000561253 ADRA2BP18089 450 aa18.55■□□□□ 0.56
LRRC28-220ENST00000561253 PPP6R1Q9UPN7 881 aa18.51■□□□□ 0.55
LRRC28-220ENST00000561253 PIAS4Q8N2W9 510 aaPredicted RBP18.03■□□□□ 0.48
LRRC28-220ENST00000561253 MSH5O43196 834 aa17.41■□□□□ 0.38
LRRC28-220ENST00000561253 PPP4R3CPQ6ZMV5 832 aa17.35■□□□□ 0.37
LRRC28-220ENST00000561253 KCNA4P22459 653 aa17.32■□□□□ 0.36
LRRC28-220ENST00000561253 NCBP3Q53F19 620 aaKnown RBP17.04■□□□□ 0.32
LRRC28-220ENST00000561253 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
LRRC28-220ENST00000561253 CNKSR2Q8WXI2 1034 aa16.8■□□□□ 0.28
LRRC28-220ENST00000561253 NPM3O75607 178 aaKnown RBP16.73■□□□□ 0.27
LRRC28-220ENST00000561253 MAPK8IP2Q13387 824 aaPredicted RBP16.71■□□□□ 0.27
LRRC28-220ENST00000561253 SLC4A1APQ9BWU0 796 aaKnown RBP16.58■□□□□ 0.24
LRRC28-220ENST00000561253 EHMT2Q96KQ7 1210 aa16.51■□□□□ 0.23
LRRC28-220ENST00000561253 DMRT2Q9Y5R5 561 aa16.41■□□□□ 0.22
LRRC28-220ENST00000561253 RNF216Q9NWF9 866 aaPredicted RBP16.38■□□□□ 0.21
LRRC28-220ENST00000561253 HOXD11P31277 338 aaPredicted RBP16.2■□□□□ 0.18
LRRC28-220ENST00000561253 DNAJC5BQ9UF47 199 aa16.16■□□□□ 0.18
LRRC28-220ENST00000561253 CSRNP3Q8WYN3 585 aa16.12■□□□□ 0.17
LRRC28-220ENST00000561253 ZBTB22O15209 634 aa15.91■□□□□ 0.14
LRRC28-220ENST00000561253 FOXD4L1Q9NU39 408 aa15.86■□□□□ 0.13
LRRC28-220ENST00000561253 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.12
LRRC28-220ENST00000561253 SLC4A2P04920 1241 aa15.69■□□□□ 0.1
LRRC28-220ENST00000561253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.5■□□□□ 0.07
LRRC28-220ENST00000561253 MYCNP04198 464 aaPredicted RBP15.49■□□□□ 0.07
LRRC28-220ENST00000561253 ATXN8OSP0DMR3 200 aa15.28■□□□□ 0.04
LRRC28-220ENST00000561253 U3KPZ7 1027 aaPredicted RBP15.24■□□□□ 0.03
LRRC28-220ENST00000561253 POTEDQ86YR6 584 aa15.23■□□□□ 0.03
LRRC28-220ENST00000561253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.22■□□□□ 0.03
LRRC28-220ENST00000561253 HNRNPUL2Q1KMD3 747 aaKnown RBP15.22■□□□□ 0.03
LRRC28-220ENST00000561253 SAMD1Q6SPF0 538 aaPredicted RBP15.16■□□□□ 0.02
LRRC28-220ENST00000561253 APLP2Q06481 763 aa15□□□□□ -0.01
LRRC28-220ENST00000561253 ATF5Q9Y2D1 282 aaPredicted RBP15□□□□□ -0.01
LRRC28-220ENST00000561253 RNF39Q9H2S5 420 aa14.92□□□□□ -0.02
LRRC28-220ENST00000561253 C1QBPQ07021 282 aaKnown RBP14.78□□□□□ -0.04
LRRC28-220ENST00000561253 ZNF219Q9P2Y4 722 aaPredicted RBP14.77□□□□□ -0.05
LRRC28-220ENST00000561253 SPINK5Q9NQ38 1064 aaPredicted RBP14.72□□□□□ -0.05
LRRC28-220ENST00000561253 CAPN15O75808 1086 aa14.7□□□□□ -0.06
LRRC28-220ENST00000561253 TRHP20396 242 aaPredicted RBP14.7□□□□□ -0.06
LRRC28-220ENST00000561253 FKBP8Q14318 412 aa14.59□□□□□ -0.07
LRRC28-220ENST00000561253 POLA2Q14181 598 aa14.51□□□□□ -0.09
LRRC28-220ENST00000561253 ABCB7O75027 752 aa14.42□□□□□ -0.1
LRRC28-220ENST00000561253 FBLN2P98095 1184 aa14.42□□□□□ -0.1
LRRC28-220ENST00000561253 MKRN4PQ13434 485 aaPredicted RBP14.36□□□□□ -0.11
LRRC28-220ENST00000561253 CACNB1Q02641 598 aaPredicted RBP14.34□□□□□ -0.11
LRRC28-220ENST00000561253 ZBTB12Q9Y330 459 aaPredicted RBP14.33□□□□□ -0.12
LRRC28-220ENST00000561253 DSG3P32926 999 aa14.32□□□□□ -0.12
LRRC28-220ENST00000561253 SPDYE4A6NLX3 237 aa14.25□□□□□ -0.13
LRRC28-220ENST00000561253 NISCHQ9Y2I1 1504 aa14.22□□□□□ -0.13
LRRC28-220ENST00000561253 PROM2Q8N271 834 aa14.01□□□□□ -0.17
LRRC28-220ENST00000561253 OSCARQ8IYS5 282 aa14□□□□□ -0.17
LRRC28-220ENST00000561253 FBXO3Q9UK99 471 aa14□□□□□ -0.17
LRRC28-220ENST00000561253 ZNF692Q9BU19 519 aaPredicted RBP13.96□□□□□ -0.17
LRRC28-220ENST00000561253 SPDYE2BA6NHP3 402 aa13.95□□□□□ -0.18
LRRC28-220ENST00000561253 SPDYE6P0CI01 402 aa13.95□□□□□ -0.18
LRRC28-220ENST00000561253 SPDYE2Q495Y8 402 aa13.95□□□□□ -0.18
LRRC28-220ENST00000561253 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
LRRC28-220ENST00000561253 SSUH2Q9Y2M2 353 aa13.84□□□□□ -0.19
LRRC28-220ENST00000561253 RTN4Q9NQC3 1192 aaKnown RBP13.83□□□□□ -0.2
LRRC28-220ENST00000561253 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
LRRC28-220ENST00000561253 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.2
LRRC28-220ENST00000561253 RBM42Q9BTD8 480 aaKnown RBP13.68□□□□□ -0.22
LRRC28-220ENST00000561253 STAG3Q9UJ98 1225 aa13.66□□□□□ -0.22
LRRC28-220ENST00000561253 IFNLR1Q8IU57 520 aaPredicted RBP13.59□□□□□ -0.23
LRRC28-220ENST00000561253 AKT1S1Q96B36 256 aa13.56□□□□□ -0.24
LRRC28-220ENST00000561253 PLCD3Q8N3E9 789 aa13.54□□□□□ -0.24
LRRC28-220ENST00000561253 KLHL34Q8N239 644 aa13.51□□□□□ -0.25
LRRC28-220ENST00000561253 MIER1Q8N108 512 aa13.5□□□□□ -0.25
LRRC28-220ENST00000561253 SPDYE1Q8NFV5 336 aaPredicted RBP13.47□□□□□ -0.25
LRRC28-220ENST00000561253 PLEKHG5O94827 1062 aa13.45□□□□□ -0.26
LRRC28-220ENST00000561253 REM2Q8IYK8 340 aaPredicted RBP13.43□□□□□ -0.26
LRRC28-220ENST00000561253 SPOCK2Q92563 424 aa13.41□□□□□ -0.26
LRRC28-220ENST00000561253 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
LRRC28-220ENST00000561253 ZBTB47Q9UFB7 747 aaPredicted RBP13.36□□□□□ -0.27
LRRC28-220ENST00000561253 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
LRRC28-220ENST00000561253 PITPNM1O00562 1244 aa13.27□□□□□ -0.29
LRRC28-220ENST00000561253 PKD2Q13563 968 aa13.26□□□□□ -0.29
LRRC28-220ENST00000561253 CREBZFQ9NS37 354 aa13.19□□□□□ -0.3
LRRC28-220ENST00000561253 ECM2O94769 699 aaPredicted RBP13.17□□□□□ -0.3
LRRC28-220ENST00000561253 DCAF8L2P0C7V8 631 aa13.17□□□□□ -0.3
LRRC28-220ENST00000561253 CIZ1Q9ULV3 898 aaPredicted RBP13.17□□□□□ -0.3
LRRC28-220ENST00000561253 SLC24A1O60721 1099 aa13.08□□□□□ -0.32
LRRC28-220ENST00000561253 MNX1P50219 401 aaPredicted RBP13.08□□□□□ -0.32
LRRC28-220ENST00000561253 NUBP1P53384 320 aa13.07□□□□□ -0.32
LRRC28-220ENST00000561253 GSE1Q14687 1217 aa13.06□□□□□ -0.32
LRRC28-220ENST00000561253 NPM1P06748 294 aaKnown RBP eCLIP13.04□□□□□ -0.32
LRRC28-220ENST00000561253 DCAF8Q5TAQ9 597 aa13.03□□□□□ -0.32
LRRC28-220ENST00000561253 TRIM41Q8WV44 630 aa13.03□□□□□ -0.32
LRRC28-220ENST00000561253 CHADLQ6NUI6 762 aa13.02□□□□□ -0.33
LRRC28-220ENST00000561253 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
LRRC28-220ENST00000561253 RGL2O15211 777 aa12.99□□□□□ -0.33
LRRC28-220ENST00000561253 PRKAR2AP13861 404 aaKnown RBP12.95□□□□□ -0.34
LRRC28-220ENST00000561253 CHRDL2Q6WN34 429 aa12.95□□□□□ -0.34
LRRC28-220ENST00000561253 RASEFQ8IZ41 740 aa12.95□□□□□ -0.34
LRRC28-220ENST00000561253 FXR2P51116 673 aaKnown RBP eCLIP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms