RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 PPP4CP60510 307 aa9.71□□□□□ -0.86
VIPAS39-205ENST00000553691 RBM46Q8TBY0 533 aaKnown RBP9.71□□□□□ -0.86
VIPAS39-205ENST00000553691 SLC26A8Q96RN1 970 aa9.71□□□□□ -0.86
VIPAS39-205ENST00000553691 AFF2P51816 1311 aa9.71□□□□□ -0.86
VIPAS39-205ENST00000553691 NEXMIFQ5QGS0 1516 aa9.71□□□□□ -0.86
VIPAS39-205ENST00000553691 HDGFP51858 240 aaKnown RBP9.7□□□□□ -0.86
VIPAS39-205ENST00000553691 RBM6P78332 1123 aaKnown RBP9.7□□□□□ -0.86
VIPAS39-205ENST00000553691 NGLY1Q96IV0 654 aa9.7□□□□□ -0.86
VIPAS39-205ENST00000553691 DIP2AQ14689 1571 aa9.7□□□□□ -0.86
VIPAS39-205ENST00000553691 RCCD1A6NED2 376 aa9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 NKTRP30414 1462 aaKnown RBP9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 ATAD2Q6PL18 1390 aa9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 NLRP7Q8WX94 980 aa9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 QTRT2Q9H974 415 aaKnown RBP9.69□□□□□ -0.86
VIPAS39-205ENST00000553691 KIF1BO60333 1816 aa9.68□□□□□ -0.86
VIPAS39-205ENST00000553691 XRN1Q8IZH2 1706 aaKnown RBP9.68□□□□□ -0.86
VIPAS39-205ENST00000553691 PTPRUQ92729 1446 aa9.67□□□□□ -0.86
VIPAS39-205ENST00000553691 ATF3P18847 181 aa9.67□□□□□ -0.86
VIPAS39-205ENST00000553691 DNAJB2P25686 324 aa9.67□□□□□ -0.86
VIPAS39-205ENST00000553691 LMOD2Q6P5Q4 547 aa9.67□□□□□ -0.86
VIPAS39-205ENST00000553691 C8orf37Q96NL8 207 aa9.67□□□□□ -0.86
VIPAS39-205ENST00000553691 PXYLP1Q8TE99 480 aa9.66□□□□□ -0.86
VIPAS39-205ENST00000553691 PPLO60437 1756 aa9.65□□□□□ -0.86
VIPAS39-205ENST00000553691 NHSL1Q5SYE7 1610 aa9.65□□□□□ -0.86
VIPAS39-205ENST00000553691 METTL3Q86U44 580 aaKnown RBP9.65□□□□□ -0.86
VIPAS39-205ENST00000553691 CCDC125Q86Z20 511 aa9.65□□□□□ -0.86
VIPAS39-205ENST00000553691 TBX22Q9Y458 520 aa9.65□□□□□ -0.86
VIPAS39-205ENST00000553691 IFT172Q9UG01 1749 aa9.65□□□□□ -0.87
VIPAS39-205ENST00000553691 OATP04181 439 aa9.64□□□□□ -0.87
VIPAS39-205ENST00000553691 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.64□□□□□ -0.87
VIPAS39-205ENST00000553691 TMEM134Q9H6X4 195 aa9.64□□□□□ -0.87
VIPAS39-205ENST00000553691 SPATA31E1Q6ZUB1 1445 aa9.64□□□□□ -0.87
VIPAS39-205ENST00000553691 SETD5Q9C0A6 1442 aa9.64□□□□□ -0.87
VIPAS39-205ENST00000553691 PIK3R4Q99570 1358 aa9.63□□□□□ -0.87
VIPAS39-205ENST00000553691 SLF2Q8IX21 1173 aa9.63□□□□□ -0.87
VIPAS39-205ENST00000553691 AHDC1Q5TGY3 1603 aaPredicted RBP9.63□□□□□ -0.87
VIPAS39-205ENST00000553691 METP08581 1390 aa9.63□□□□□ -0.87
VIPAS39-205ENST00000553691 PPP1R15AO75807 674 aaPredicted RBP9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 YY1P25490 414 aa9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 APLP1P51693 650 aa9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 PHOX2BQ99453 314 aa9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 RAB3GAP2Q9H2M9 1393 aa9.62□□□□□ -0.87
VIPAS39-205ENST00000553691 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 NYAP1Q6ZVC0 841 aa9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 LRRC59Q96AG4 307 aaKnown RBP9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 MPHOSPH9Q99550 1183 aa9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 C19orf44Q9H6X5 657 aa9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 PRAG1Q86YV5 1406 aa9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 NCOA3Q9Y6Q9 1424 aa9.61□□□□□ -0.87
VIPAS39-205ENST00000553691 SLC4A3P48751 1232 aa9.6□□□□□ -0.87
VIPAS39-205ENST00000553691 ADAMTS2O95450 1211 aa9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 HRCP23327 699 aa9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 BRINP3Q76B58 766 aa9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 TRPC5Q9UL62 973 aaPredicted RBP9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 ASXL1Q8IXJ9 1541 aa9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 NALCNQ8IZF0 1738 aa9.59□□□□□ -0.87
VIPAS39-205ENST00000553691 MAP2K5Q13163 448 aa9.58□□□□□ -0.88
VIPAS39-205ENST00000553691 SF3B2Q13435 895 aaKnown RBP9.58□□□□□ -0.88
VIPAS39-205ENST00000553691 USP21Q9UK80 565 aa9.58□□□□□ -0.88
VIPAS39-205ENST00000553691 CCDC144AA2RUR9 1427 aa9.57□□□□□ -0.88
VIPAS39-205ENST00000553691 SLC10A3P09131 477 aa9.57□□□□□ -0.88
VIPAS39-205ENST00000553691 ZNF326Q5BKZ1 582 aaKnown RBP9.57□□□□□ -0.88
VIPAS39-205ENST00000553691 MTRQ99707 1265 aa9.57□□□□□ -0.88
VIPAS39-205ENST00000553691 AMOTL2Q9Y2J4 779 aa9.57□□□□□ -0.88
VIPAS39-205ENST00000553691 RPGRIP1LQ68CZ1 1315 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 BRWD3Q6RI45 1802 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 NRXN1Q9ULB1 1477 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 IRF6O14896 467 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 ITGBL1O95965 494 aaPredicted RBP9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 CFHP08603 1231 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 COPS2P61201 443 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 KCNC4Q03721 635 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 ZC3H15Q8WU90 426 aaKnown RBP9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 PIK3C2GO75747 1445 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 DCCP43146 1447 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 PTCH1Q13635 1447 aa9.56□□□□□ -0.88
VIPAS39-205ENST00000553691 ANKRD30BQ9BXX2 1392 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 SENP3-EIF4A1A0A087X0R7 540 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 TJAP1Q5JTD0 557 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 ZNF516Q92618 1163 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 CCDC102AQ96A19 550 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 ADGRF5Q8IZF2 1346 aa9.55□□□□□ -0.88
VIPAS39-205ENST00000553691 KNDC1Q76NI1 1749 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 ROBO2Q9HCK4 1378 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 DDX11L8A8MPP1 907 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 KRI1Q8N9T8 703 aaKnown RBP9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 RDH13Q8NBN7 331 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 MST1RQ04912 1400 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 ADGRL3Q9HAR2 1447 aa9.54□□□□□ -0.88
VIPAS39-205ENST00000553691 MYOM2P54296 1465 aa9.53□□□□□ -0.88
VIPAS39-205ENST00000553691 DAXXQ9UER7 740 aaPredicted RBP9.53□□□□□ -0.88
VIPAS39-205ENST00000553691 TECPR2O15040 1411 aa9.53□□□□□ -0.88
VIPAS39-205ENST00000553691 MINK1Q8N4C8 1332 aaPredicted RBP9.53□□□□□ -0.88
VIPAS39-205ENST00000553691 NECTIN2Q92692 538 aa9.52□□□□□ -0.89
VIPAS39-205ENST00000553691 PCGF6Q9BYE7 350 aa9.52□□□□□ -0.89
VIPAS39-205ENST00000553691 PCDHB3Q9Y5E6 796 aa9.52□□□□□ -0.89
VIPAS39-205ENST00000553691 LAMC1P11047 1609 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms