RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 AEBP2Q6ZN18 517 aaPredicted RBP23.76■■□□□ 1.39
VIPAS39-205ENST00000553691 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
VIPAS39-205ENST00000553691 PHF23Q9BUL5 403 aaPredicted RBP20.17■□□□□ 0.82
VIPAS39-205ENST00000553691 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
VIPAS39-205ENST00000553691 FOXD1Q16676 465 aa18.77■□□□□ 0.6
VIPAS39-205ENST00000553691 PLPPR3Q6T4P5 718 aa18.46■□□□□ 0.55
VIPAS39-205ENST00000553691 PPP6R1Q9UPN7 881 aa17.9■□□□□ 0.46
VIPAS39-205ENST00000553691 ADRA2BP18089 450 aa17.89■□□□□ 0.45
VIPAS39-205ENST00000553691 PIAS4Q8N2W9 510 aaPredicted RBP17.64■□□□□ 0.41
VIPAS39-205ENST00000553691 MSH5O43196 834 aa17.31■□□□□ 0.36
VIPAS39-205ENST00000553691 POTEDQ86YR6 584 aa17.26■□□□□ 0.35
VIPAS39-205ENST00000553691 MAPK8IP2Q13387 824 aaPredicted RBP16.33■□□□□ 0.2
VIPAS39-205ENST00000553691 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
VIPAS39-205ENST00000553691 SCAF1Q9H7N4 1312 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-205ENST00000553691 NISCHQ9Y2I1 1504 aa16.04■□□□□ 0.16
VIPAS39-205ENST00000553691 DMRT2Q9Y5R5 561 aa16.01■□□□□ 0.15
VIPAS39-205ENST00000553691 CNKSR2Q8WXI2 1034 aa15.83■□□□□ 0.12
VIPAS39-205ENST00000553691 NCBP3Q53F19 620 aaKnown RBP15.73■□□□□ 0.11
VIPAS39-205ENST00000553691 KCNA4P22459 653 aa15.68■□□□□ 0.1
VIPAS39-205ENST00000553691 HOXD11P31277 338 aaPredicted RBP15.57■□□□□ 0.08
VIPAS39-205ENST00000553691 RNF216Q9NWF9 866 aaPredicted RBP15.57■□□□□ 0.08
VIPAS39-205ENST00000553691 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
VIPAS39-205ENST00000553691 DCAF8L1A6NGE4 600 aa15.48■□□□□ 0.07
VIPAS39-205ENST00000553691 DNAJC5BQ9UF47 199 aa14.94□□□□□ -0.02
VIPAS39-205ENST00000553691 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.024e-6■■■■□ 19.8
VIPAS39-205ENST00000553691 SLC4A1APQ9BWU0 796 aaKnown RBP14.85□□□□□ -0.03
VIPAS39-205ENST00000553691 RNF39Q9H2S5 420 aa14.84□□□□□ -0.03
VIPAS39-205ENST00000553691 SLC4A2P04920 1241 aa14.76□□□□□ -0.05
VIPAS39-205ENST00000553691 CACNB1Q02641 598 aaPredicted RBP14.69□□□□□ -0.06
VIPAS39-205ENST00000553691 U3KPZ7 1027 aaPredicted RBP14.64□□□□□ -0.07
VIPAS39-205ENST00000553691 ABCC9O60706 1549 aa14.63□□□□□ -0.07
VIPAS39-205ENST00000553691 C1QBPQ07021 282 aaKnown RBP14.61□□□□□ -0.07
VIPAS39-205ENST00000553691 ZBTB22O15209 634 aa14.43□□□□□ -0.1
VIPAS39-205ENST00000553691 FOXD4L1Q9NU39 408 aa14.43□□□□□ -0.1
VIPAS39-205ENST00000553691 SPINK5Q9NQ38 1064 aaPredicted RBP14.36□□□□□ -0.11
VIPAS39-205ENST00000553691 MYCNP04198 464 aaPredicted RBP14.34□□□□□ -0.11
VIPAS39-205ENST00000553691 CCDC180Q9P1Z9 1646 aa14.33□□□□□ -0.11
VIPAS39-205ENST00000553691 CAPN15O75808 1086 aa14.3□□□□□ -0.12
VIPAS39-205ENST00000553691 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-205ENST00000553691 HNRNPUL2Q1KMD3 747 aaKnown RBP14.26□□□□□ -0.13
VIPAS39-205ENST00000553691 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
VIPAS39-205ENST00000553691 SAMD1Q6SPF0 538 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-205ENST00000553691 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
VIPAS39-205ENST00000553691 APLP2Q06481 763 aa14.16□□□□□ -0.14
VIPAS39-205ENST00000553691 CSRNP3Q8WYN3 585 aa14.12□□□□□ -0.15
VIPAS39-205ENST00000553691 ATF5Q9Y2D1 282 aaPredicted RBP14.08□□□□□ -0.16
VIPAS39-205ENST00000553691 DSG3P32926 999 aa14.07□□□□□ -0.16
VIPAS39-205ENST00000553691 ZNF219Q9P2Y4 722 aaPredicted RBP14.06□□□□□ -0.16
VIPAS39-205ENST00000553691 ABCB7O75027 752 aa14.05□□□□□ -0.16
VIPAS39-205ENST00000553691 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
VIPAS39-205ENST00000553691 POLA2Q14181 598 aa13.86□□□□□ -0.19
VIPAS39-205ENST00000553691 DNAJC5Q9H3Z4 198 aa13.75□□□□□ -0.21
VIPAS39-205ENST00000553691 RB1CC1Q8TDY2 1594 aa13.62□□□□□ -0.23
VIPAS39-205ENST00000553691 UNC13AQ9UPW8 1703 aa13.52□□□□□ -0.25
VIPAS39-205ENST00000553691 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-205ENST00000553691 PABPN1Q86U42 306 aaKnown RBP eCLIP13.48□□□□□ -0.25
VIPAS39-205ENST00000553691 NACADO15069 1562 aa13.47□□□□□ -0.25
VIPAS39-205ENST00000553691 OSCARQ8IYS5 282 aa13.43□□□□□ -0.26
VIPAS39-205ENST00000553691 MKRN4PQ13434 485 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-205ENST00000553691 FBLN2P98095 1184 aa13.41□□□□□ -0.26
VIPAS39-205ENST00000553691 MYO15BQ96JP2 1530 aa13.39□□□□□ -0.27
VIPAS39-205ENST00000553691 ZCCHC6Q5VYS8 1495 aaKnown RBP13.36□□□□□ -0.27
VIPAS39-205ENST00000553691 DCAF8L2P0C7V8 631 aa13.36□□□□□ -0.27
VIPAS39-205ENST00000553691 RBM42Q9BTD8 480 aaKnown RBP13.34□□□□□ -0.27
VIPAS39-205ENST00000553691 POTEHQ6S545 545 aa13.32□□□□□ -0.28
VIPAS39-205ENST00000553691 DCAF1Q9Y4B6 1507 aa13.29□□□□□ -0.28
VIPAS39-205ENST00000553691 CC2D2AQ9P2K1 1620 aa13.24□□□□□ -0.29
VIPAS39-205ENST00000553691 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
VIPAS39-205ENST00000553691 CECR2Q9BXF3 1484 aa13.24□□□□□ -0.29
VIPAS39-205ENST00000553691 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
VIPAS39-205ENST00000553691 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
VIPAS39-205ENST00000553691 SPDYE2Q495Y8 402 aa13.15□□□□□ -0.3
VIPAS39-205ENST00000553691 AKT1S1Q96B36 256 aa13.14□□□□□ -0.31
VIPAS39-205ENST00000553691 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-205ENST00000553691 REM2Q8IYK8 340 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-205ENST00000553691 SCRIBQ14160 1630 aa13.04□□□□□ -0.32
VIPAS39-205ENST00000553691 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
VIPAS39-205ENST00000553691 EIF4G1Q04637 1599 aaKnown RBP12.98□□□□□ -0.33
VIPAS39-205ENST00000553691 SPDYE4A6NLX3 237 aa12.98□□□□□ -0.33
VIPAS39-205ENST00000553691 SHROOM4Q9ULL8 1493 aa12.97□□□□□ -0.33
VIPAS39-205ENST00000553691 PITPNM1O00562 1244 aa12.95□□□□□ -0.34
VIPAS39-205ENST00000553691 CHRDL2Q6WN34 429 aa12.95□□□□□ -0.34
VIPAS39-205ENST00000553691 CUX2O14529 1486 aa12.93□□□□□ -0.34
VIPAS39-205ENST00000553691 CLEC11AQ9Y240 323 aa12.9□□□□□ -0.34
VIPAS39-205ENST00000553691 TRIM41Q8WV44 630 aa12.88□□□□□ -0.35
VIPAS39-205ENST00000553691 SPDYE1Q8NFV5 336 aaPredicted RBP12.83□□□□□ -0.36
VIPAS39-205ENST00000553691 FKBP8Q14318 412 aa12.81□□□□□ -0.36
VIPAS39-205ENST00000553691 PIP4P2Q8N4L2 257 aa12.76□□□□□ -0.37
VIPAS39-205ENST00000553691 FXR2P51116 673 aaKnown RBP eCLIP12.7□□□□□ -0.38
VIPAS39-205ENST00000553691 ERCC6Q03468 1493 aa12.7□□□□□ -0.38
VIPAS39-205ENST00000553691 PRR29P0C7W0 189 aa12.69□□□□□ -0.38
VIPAS39-205ENST00000553691 PROM2Q8N271 834 aa12.65□□□□□ -0.38
VIPAS39-205ENST00000553691 CHADLQ6NUI6 762 aa12.64□□□□□ -0.39
VIPAS39-205ENST00000553691 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
VIPAS39-205ENST00000553691 STAG3Q9UJ98 1225 aa12.6□□□□□ -0.39
VIPAS39-205ENST00000553691 SMARCA4P51532 1647 aa12.48□□□□□ -0.41
VIPAS39-205ENST00000553691 CREBZFQ9NS37 354 aa12.48□□□□□ -0.41
VIPAS39-205ENST00000553691 THOC2Q8NI27 1593 aaKnown RBP12.47□□□□□ -0.41
VIPAS39-205ENST00000553691 NCAPD3P42695 1498 aa12.45□□□□□ -0.42
VIPAS39-205ENST00000553691 HAX1O00165 279 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms