RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MYOM2P54296 1465 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 FAM161AQ3B820 660 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 SETBP1Q9Y6X0 1596 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 PIK3C2GO75747 1445 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 KCNA6P17658 529 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 PDE4DQ08499 809 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 PROX2Q3B8N5 592 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 POTEEQ6S8J3 1075 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 TTC13Q8NBP0 860 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 TRAIPQ9BWF2 469 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 C14orf93Q9H972 538 aaKnown RBP7.22□□□□□ -1.25
CLIP1-217ENST00000543205 DIP2AQ14689 1571 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 NRXN1Q9ULB1 1477 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 TRIM6-TRIM34B2RNG4 842 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 CFAP70Q5T0N1 1121 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 TSKSQ9UJT2 592 aa7.22□□□□□ -1.25
CLIP1-217ENST00000543205 IFT172Q9UG01 1749 aa7.21□□□□□ -1.25
CLIP1-217ENST00000543205 METP08581 1390 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 PIK3R4Q99570 1358 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 FAM198AQ9UFP1 575 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 AMOTL2Q9Y2J4 779 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 ADGRG1Q9Y653 693 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 ALKQ9UM73 1620 aa7.21□□□□□ -1.26
CLIP1-217ENST00000543205 OATP04181 439 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 MFAP1P55081 439 aaKnown RBP7.2□□□□□ -1.26
CLIP1-217ENST00000543205 DMRTA1Q5VZB9 504 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 TMEM132EQ6IEE7 984 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 PROSER2Q86WR7 435 aaPredicted RBP7.2□□□□□ -1.26
CLIP1-217ENST00000543205 PUS7Q96PZ0 661 aaKnown RBP7.2□□□□□ -1.26
CLIP1-217ENST00000543205 ZBED2Q9BTP6 218 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 NRXN3Q9Y4C0 1643 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 A0A0G2JS52 829 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 NBPF26B4DH59 902 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 TTLL12Q14166 644 aaPredicted RBP7.2□□□□□ -1.26
CLIP1-217ENST00000543205 AMHR2Q16671 573 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 TMCO4Q5TGY1 634 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 CLUAP1Q96AJ1 413 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 STK26Q9P289 416 aa7.2□□□□□ -1.26
CLIP1-217ENST00000543205 PRAG1Q86YV5 1406 aa7.19□□□□□ -1.26
CLIP1-217ENST00000543205 CPS1P31327 1500 aa7.19□□□□□ -1.26
CLIP1-217ENST00000543205 HMGB1P09429 215 aaKnown RBP7.19□□□□□ -1.26
CLIP1-217ENST00000543205 HSPA1LP34931 641 aa7.19□□□□□ -1.26
CLIP1-217ENST00000543205 METTL3Q86U44 580 aaKnown RBP7.19□□□□□ -1.26
CLIP1-217ENST00000543205 PACS2Q86VP3 889 aa7.19□□□□□ -1.26
CLIP1-217ENST00000543205 RBM46Q8TBY0 533 aaKnown RBP7.19□□□□□ -1.26
CLIP1-217ENST00000543205 PNMA3Q9UL41 463 aa7.19□□□□□ -1.26
CLIP1-217ENST00000543205 PXYLP1Q8TE99 480 aa7.18□□□□□ -1.26
CLIP1-217ENST00000543205 PTPRUQ92729 1446 aa7.18□□□□□ -1.26
CLIP1-217ENST00000543205 NUDT18Q6ZVK8 323 aa7.18□□□□□ -1.26
CLIP1-217ENST00000543205 MED1Q15648 1581 aaPredicted RBP7.18□□□□□ -1.26
CLIP1-217ENST00000543205 LRPPRCP42704 1394 aaKnown RBP7.18□□□□□ -1.26
CLIP1-217ENST00000543205 NKTRP30414 1462 aaKnown RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 LAMC1P11047 1609 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 ONECUT3O60422 494 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 NBPF1Q3BBV0 1214 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 NBPF8Q3BBV2 869 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 PARP9Q8IXQ6 854 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 TATDN2Q93075 761 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 GZF1Q9H116 711 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 YTHDC2Q9H6S0 1430 aaKnown RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 NWD1Q149M9 1564 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 CHD2O14647 1828 aaKnown RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 HRO43593 1189 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 PIP4K2BP78356 416 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 MDM2Q00987 491 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-217ENST00000543205 NLRP7Q8WX94 980 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 PHOX2BQ99453 314 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 KIAA1468Q9P260 1216 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 TRAK1Q9UPV9 953 aa7.17□□□□□ -1.26
CLIP1-217ENST00000543205 LRRC7Q96NW7 1537 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 ROCK2O75116 1388 aaKnown RBP7.16□□□□□ -1.26
CLIP1-217ENST00000543205 TMEM94Q12767 1356 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 ABCC11Q96J66 1382 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 C3orf80F5H4A9 247 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 SMAPO00193 183 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 TRAK2O60296 914 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 SLC4A5Q9BY07 1137 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 POGKQ9P215 609 aa7.16□□□□□ -1.26
CLIP1-217ENST00000543205 SETD1AO15047 1707 aaKnown RBP7.16□□□□□ -1.26
CLIP1-217ENST00000543205 STRCP1A6NGW2 1772 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 TOM1O60784 492 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 CLCN1P35523 988 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 SIRT1Q96EB6 747 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 FAM117AQ9C073 453 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 ROBO2Q9HCK4 1378 aa7.15□□□□□ -1.26
CLIP1-217ENST00000543205 PTCH1Q13635 1447 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 ASXL1Q8IXJ9 1541 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 WAPLQ7Z5K2 1190 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 KCTD12Q96CX2 325 aaKnown RBP7.15□□□□□ -1.27
CLIP1-217ENST00000543205 PRAM1Q96QH2 718 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 EYA1Q99502 592 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 CARD11Q9BXL7 1154 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 RABGEF1Q9UJ41 708 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 VPS9D1Q9Y2B5 631 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 ADGRB1O14514 1584 aa7.15□□□□□ -1.27
CLIP1-217ENST00000543205 XRN1Q8IZH2 1706 aaKnown RBP7.14□□□□□ -1.27
CLIP1-217ENST00000543205 KIAA1210Q9ULL0 1709 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 TECPR2O15040 1411 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 NCOA3Q9Y6Q9 1424 aa7.14□□□□□ -1.27
CLIP1-217ENST00000543205 MSH6P52701 1360 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms