RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 AEBP2Q6ZN18 517 aaPredicted RBP17.71■□□□□ 0.43
CLIP1-217ENST00000543205 CHIC1Q5VXU3 224 aa16.75■□□□□ 0.27
CLIP1-217ENST00000543205 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
CLIP1-217ENST00000543205 PHF23Q9BUL5 403 aaPredicted RBP15.01□□□□□ -0.01
CLIP1-217ENST00000543205 POTEDQ86YR6 584 aa14.51□□□□□ -0.09
CLIP1-217ENST00000543205 FOXD1Q16676 465 aa14.31□□□□□ -0.12
CLIP1-217ENST00000543205 MSH5O43196 834 aa13.82□□□□□ -0.2
CLIP1-217ENST00000543205 PIAS4Q8N2W9 510 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-217ENST00000543205 PLPPR3Q6T4P5 718 aa13.1□□□□□ -0.31
CLIP1-217ENST00000543205 PPP6R1Q9UPN7 881 aa12.77□□□□□ -0.37
CLIP1-217ENST00000543205 ADRA2BP18089 450 aa12.71□□□□□ -0.37
CLIP1-217ENST00000543205 CACNB1Q02641 598 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-217ENST00000543205 DMRT2Q9Y5R5 561 aa12.08□□□□□ -0.48
CLIP1-217ENST00000543205 NISCHQ9Y2I1 1504 aa11.93□□□□□ -0.5
CLIP1-217ENST00000543205 SCAF1Q9H7N4 1312 aaKnown RBP11.88□□□□□ -0.51
CLIP1-217ENST00000543205 MAPK8IP2Q13387 824 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-217ENST00000543205 RNF39Q9H2S5 420 aa11.64□□□□□ -0.55
CLIP1-217ENST00000543205 PPP4R3CPQ6ZMV5 832 aa11.57□□□□□ -0.56
CLIP1-217ENST00000543205 DCAF8L1A6NGE4 600 aa11.53□□□□□ -0.56
CLIP1-217ENST00000543205 C1QBPQ07021 282 aaKnown RBP11.51□□□□□ -0.57
CLIP1-217ENST00000543205 KCNA4P22459 653 aa11.47□□□□□ -0.57
CLIP1-217ENST00000543205 HOXD11P31277 338 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-217ENST00000543205 NCBP3Q53F19 620 aaKnown RBP11.31□□□□□ -0.6
CLIP1-217ENST00000543205 DNAJC5BQ9UF47 199 aa11.27□□□□□ -0.61
CLIP1-217ENST00000543205 POTEHQ6S545 545 aa11.25□□□□□ -0.61
CLIP1-217ENST00000543205 CNKSR2Q8WXI2 1034 aa11.21□□□□□ -0.62
CLIP1-217ENST00000543205 NPM3O75607 178 aaKnown RBP11.14□□□□□ -0.63
CLIP1-217ENST00000543205 RNF216Q9NWF9 866 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-217ENST00000543205 SLC4A1APQ9BWU0 796 aaKnown RBP10.97□□□□□ -0.65
CLIP1-217ENST00000543205 EHMT2Q96KQ7 1210 aa10.86□□□□□ -0.67
CLIP1-217ENST00000543205 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.82□□□□□ -0.686e-6■□□□□ 11
CLIP1-217ENST00000543205 DSG3P32926 999 aa10.65□□□□□ -0.71
CLIP1-217ENST00000543205 CSRNP3Q8WYN3 585 aa10.62□□□□□ -0.71
CLIP1-217ENST00000543205 ZBTB22O15209 634 aa10.55□□□□□ -0.72
CLIP1-217ENST00000543205 CAPN15O75808 1086 aa10.55□□□□□ -0.72
CLIP1-217ENST00000543205 CCDC180Q9P1Z9 1646 aa10.54□□□□□ -0.72
CLIP1-217ENST00000543205 FOXD4L1Q9NU39 408 aa10.53□□□□□ -0.72
CLIP1-217ENST00000543205 SLC4A2P04920 1241 aa10.46□□□□□ -0.73
CLIP1-217ENST00000543205 U3KPZ7 1027 aaPredicted RBP10.46□□□□□ -0.74
CLIP1-217ENST00000543205 SPINK5Q9NQ38 1064 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-217ENST00000543205 SLC24A1O60721 1099 aa10.41□□□□□ -0.74
CLIP1-217ENST00000543205 APLP2Q06481 763 aa10.35□□□□□ -0.75
CLIP1-217ENST00000543205 RBM42Q9BTD8 480 aaKnown RBP10.32□□□□□ -0.76
CLIP1-217ENST00000543205 MYCNP04198 464 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-217ENST00000543205 ZNF219Q9P2Y4 722 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-217ENST00000543205 ABCC9O60706 1549 aa10.26□□□□□ -0.77
CLIP1-217ENST00000543205 SP7Q8TDD2 431 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-217ENST00000543205 CHRDL2Q6WN34 429 aa10.24□□□□□ -0.77
CLIP1-217ENST00000543205 TRHP20396 242 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-217ENST00000543205 ABCB7O75027 752 aa10.17□□□□□ -0.78
CLIP1-217ENST00000543205 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.14□□□□□ -0.79
CLIP1-217ENST00000543205 HNRNPUL2Q1KMD3 747 aaKnown RBP10.14□□□□□ -0.79
CLIP1-217ENST00000543205 ATXN8OSP0DMR3 200 aa10.12□□□□□ -0.79
CLIP1-217ENST00000543205 SAMD1Q6SPF0 538 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-217ENST00000543205 DCAF8L2P0C7V8 631 aa10.01□□□□□ -0.81
CLIP1-217ENST00000543205 ATF5Q9Y2D1 282 aaPredicted RBP10□□□□□ -0.81
CLIP1-217ENST00000543205 ZCCHC6Q5VYS8 1495 aaKnown RBP9.95□□□□□ -0.82
CLIP1-217ENST00000543205 NACADO15069 1562 aa9.91□□□□□ -0.82
CLIP1-217ENST00000543205 RB1CC1Q8TDY2 1594 aa9.9□□□□□ -0.82
CLIP1-217ENST00000543205 AKT1S1Q96B36 256 aa9.9□□□□□ -0.82
CLIP1-217ENST00000543205 MYO15BQ96JP2 1530 aa9.88□□□□□ -0.83
CLIP1-217ENST00000543205 DCAF1Q9Y4B6 1507 aa9.86□□□□□ -0.83
CLIP1-217ENST00000543205 HAX1O00165 279 aa9.84□□□□□ -0.83
CLIP1-217ENST00000543205 PIP4P2Q8N4L2 257 aa9.83□□□□□ -0.84
CLIP1-217ENST00000543205 RTN4Q9NQC3 1192 aaKnown RBP9.77□□□□□ -0.85
CLIP1-217ENST00000543205 POLA2Q14181 598 aa9.76□□□□□ -0.85
CLIP1-217ENST00000543205 REM2Q8IYK8 340 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-217ENST00000543205 FXR2P51116 673 aaKnown RBP eCLIP9.71□□□□□ -0.86
CLIP1-217ENST00000543205 ZBTB12Q9Y330 459 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-217ENST00000543205 SCRIBQ14160 1630 aa9.65□□□□□ -0.86
CLIP1-217ENST00000543205 PABPN1Q86U42 306 aaKnown RBP eCLIP9.63□□□□□ -0.87
CLIP1-217ENST00000543205 FKBP8Q14318 412 aa9.63□□□□□ -0.87
CLIP1-217ENST00000543205 UNC13AQ9UPW8 1703 aa9.62□□□□□ -0.87
CLIP1-217ENST00000543205 FBLN2P98095 1184 aa9.6□□□□□ -0.87
CLIP1-217ENST00000543205 LHX8Q68G74 356 aa9.6□□□□□ -0.87
CLIP1-217ENST00000543205 PITPNM1O00562 1244 aa9.6□□□□□ -0.87
CLIP1-217ENST00000543205 MKRN4PQ13434 485 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-217ENST00000543205 BICRAQ9NZM4 1560 aa9.57□□□□□ -0.88
CLIP1-217ENST00000543205 EVX2Q03828 476 aa9.55□□□□□ -0.88
CLIP1-217ENST00000543205 AMER1Q5JTC6 1135 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-217ENST00000543205 SHROOM4Q9ULL8 1493 aa9.54□□□□□ -0.88
CLIP1-217ENST00000543205 PLSCR2Q9NRY7 297 aa9.49□□□□□ -0.89
CLIP1-217ENST00000543205 SPDYE4A6NLX3 237 aa9.45□□□□□ -0.9
CLIP1-217ENST00000543205 OSCARQ8IYS5 282 aa9.45□□□□□ -0.9
CLIP1-217ENST00000543205 C19orf67A6NJJ6 358 aa9.43□□□□□ -0.9
CLIP1-217ENST00000543205 GABBR2O75899 941 aa9.42□□□□□ -0.9
CLIP1-217ENST00000543205 PRKAR2AP13861 404 aaKnown RBP9.36□□□□□ -0.91
CLIP1-217ENST00000543205 DNAJC5Q9H3Z4 198 aa9.34□□□□□ -0.91
CLIP1-217ENST00000543205 EIF4G1Q04637 1599 aaKnown RBP9.33□□□□□ -0.92
CLIP1-217ENST00000543205 SPDYE2BA6NHP3 402 aa9.31□□□□□ -0.92
CLIP1-217ENST00000543205 SPDYE6P0CI01 402 aa9.31□□□□□ -0.92
CLIP1-217ENST00000543205 SPDYE2Q495Y8 402 aa9.31□□□□□ -0.92
CLIP1-217ENST00000543205 ZNF692Q9BU19 519 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-217ENST00000543205 CECR2Q9BXF3 1484 aa9.29□□□□□ -0.92
CLIP1-217ENST00000543205 SPDYE1Q8NFV5 336 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-217ENST00000543205 PROM2Q8N271 834 aa9.27□□□□□ -0.92
CLIP1-217ENST00000543205 CLCN6P51797 869 aa9.27□□□□□ -0.93
CLIP1-217ENST00000543205 CC2D2AQ9P2K1 1620 aa9.26□□□□□ -0.93
CLIP1-217ENST00000543205 BAZ1AQ9NRL2 1556 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-217ENST00000543205 SSUH2Q9Y2M2 353 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms